RetrogeneDB ID: | retro_mmus_2082 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:118483366..118484177(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084028 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Akr1b3 | ||
Ensembl ID: | ENSMUSG00000001642 | ||
Aliases: | Akr1b3, ALR2, AR, Ahr-1, Ahr1, Akr1b1, Aldor1, Aldr1 | ||
Description: | aldo-keto reductase family 1, member B3 (aldose reductase) [Source:MGI Symbol;Acc:MGI:1353494] |
Percent Identity: | 64.87 % |
Parental protein coverage: | 86.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | PPGQVTEAVKVAIDLGYRHIDCAQ-VYQNEKEVGVALQEKLKEQVV-KRQDLFIVSKLWCTFHDKSMVKG |
PPGQVT.AV.VAID.GYRH.DCAQ.V.QNEK.VGV..........V......FI.SKLWCT.HD..MVKG | |
Retrocopy | PPGQVTRAVQVAIDIGYRHPDCAQ<VHQNEKAVGVVF-QEILKEQV<RAHQFFIISKLWCTVHDRDMVKG |
Parental | AFQKTLSDLQLDYLDLYLIHWPTGFKPGPDYF-PLDASGNVIPSDTDFVD-TWTAMEQLVDEGLVKTIGV |
A.QKTL.DL.L..LDL.L.HWP.GFKPGPDYF.P.DASGN.I.SDTD..D.T.TA...L..EGLVK.IGV | |
Retrocopy | ACQKTLGDLPLYCLDLCLVHWPAGFKPGPDYF<PVDASGNMIFSDTDLGD>TRTATDHLEHEGLVKAIGV |
Parental | SNFNPLQIERILNKPGLKYKPAVNQIECHPYLTQEKLIEYCHSK-GIVVTAYSPLGSPDRPWAKPEDPSL |
S.FNPLQI.RI..KPGL..KP.V.Q.EC...LTQEK...YC.SK.GI.VT.YSPLGSPDRPWAKPE.PS. | |
Retrocopy | SDFNPLQIKRISAKPGLT*KPVVHQTECYSHLTQEKWTRYCQSK>GIGVTSYSPLGSPDRPWAKPEEPSF |
Parental | LEDPRIKAIAAKYNKTTAQVL-IRFPIQRNLVVIPKSVTPVRIAENLKVFDFEVSSEDMATLLSYNRNW |
LEDP..KA.AAK.N.TT...L...F....NLV.IPKSVTP..I.E.LKVFDF..S..D...LLS.NRNW | |
Retrocopy | LEDPKTKATAAK-NETTTRGL<TWFLPKKNLVSIPKSVTPAHIVESLKVFDFQLSVNDETNLLSPNRNW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .99 RPM |
SRP007412_heart | 0 .00 RPM | 59 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .13 RPM |
SRP007412_liver | 0 .00 RPM | 3 .30 RPM |
SRP007412_testis | 0 .05 RPM | 33 .76 RPM |