RetrogeneDB ID:

retro_nleu_1533

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397298.1:6260352..6261073(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AKR1B1
Ensembl ID:ENSNLEG00000013037
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1533
CTCATCAGCAAGCTGTGGTGCACATACCATAAGAAGGTCCTGGTGAAAGGAGACTGCCAGAAGACGCTCAGCAACCTGAA
GCTGGACTACCTGGACCTCCACCTTATTCACTGGCTGACCGGCTTTAAGCCTGGAAAAGAATTTTTCCCATTGGATGAGT
CAGACAACGTGGTTCCCAATGACACCAACATTGTGAACACATGGGCAGCCATGGTAGAGCTGGTAGATGAAGGGCTGGTG
AAAGCTATTGGCATCTCCAACTGTAATCATCTCCAGGTGGAGAGGATCTTAAAGAAACCCAGCTTAAGGTATAAGCCAGC
AGTTAACTAGATTGAGTGACACCTGTACCTCACTCAGGAGAAGTTAATCCAGTACTTCCAGTCCAAAGGCATCTTGGTGA
CCACGTATAGCCCCCTTGGCTCTCCTGACAGACCCTGGGCCAAGCCTGAGGCCCCTTCCATCCTGGAGGATCCCAGGATC
AAGGTGATCACAGCCAAGCACAATAAAACCACAGCCCAGATTCTGATCCAGTTCCCCCAGGCAGAGGAACTTGGAGGTGA
TCCCCAAGTCTGTGACACCAGAATGCATCCCTCAGAACTTTAAGATTTTTGACTTTGAACTGAGCAGCCAGGATATGACC
ACCTTACCCAGCTACAACAGGAACTGGAGGGTCTGTGCCTTGGTGAGCTGTGCCTCCCACAAGGACTACCCCTTCCACGA
A

ORF - retro_nleu_1533 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.4 %
Parental protein coverage: 75.95 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAA
..SKLWCTYH.K.LVKG.CQKTLS.LKLDYLDL.LIHW.TGFKPGKEFFPLDES.NVVP.DTNI..TWAA
RetrocopyLISKLWCTYHKKVLVKGDCQKTLSNLKLDYLDLHLIHWLTGFKPGKEFFPLDESDNVVPNDTNIVNTWAA
ParentalMEELVDEGLVKAIGISNFNHLQVETILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLG
M.ELVDEGLVKAIGISN.NHLQVE.IL.KP.L.YKPAVN.IE.H.YLTQEKLIQY.QSKGI.VT.YSPLG
RetrocopyMVELVDEGLVKAIGISNCNHLQVERILKKPSLRYKPAVN*IE*HLYLTQEKLIQYFQSKGILVTTYSPLG
ParentalSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPM-QRNLVVIPKSVTPERIAENFKVFDFELSS
SPDRPWAKPE.PS.LEDPRIK.I.AKHNKTTAQ.LI.FP..QRNL.VIPKSVTPE.I..NFK.FDFELSS
RetrocopySPDRPWAKPEAPSILEDPRIKVITAKHNKTTAQILIQFPQ>QRNLEVIPKSVTPECIPQNFKIFDFELSS
ParentalQDMTTLLSYNRNWRVCALLSCTSHKDYPFHE
QDMTTL.SYNRNWRVCAL.SC.SHKDYPFHE
RetrocopyQDMTTLPSYNRNWRVCALVSCASHKDYPFHE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1533 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000099023 retrocopies
Canis familiaris ENSCAFG000000012901 retrocopy
Callithrix jacchus ENSCJAG0000001223114 retrocopies
Dasypus novemcinctus ENSDNOG000000113582 retrocopies
Homo sapiens ENSG000000856627 retrocopies
Gorilla gorilla ENSGGOG000000117316 retrocopies
Macropus eugenii ENSMEUG000000034346 retrocopies
Microcebus murinus ENSMICG000000019212 retrocopies
Mus musculus ENSMUSG0000000164210 retrocopies
Nomascus leucogenys ENSNLEG00000013037 7 retrocopies
Nomascus leucogenys ENSNLEG000000130881 retrocopy
Nomascus leucogenys ENSNLEG000000137101 retrocopy
Otolemur garnettii ENSOGAG000000161562 retrocopies
Procavia capensis ENSPCAG000000161951 retrocopy
Pongo abelii ENSPPYG000000180178 retrocopies
Pan troglodytes ENSPTRG000000197166 retrocopies
Rattus norvegicus ENSRNOG000000095131 retrocopy
Tupaia belangeri ENSTBEG000000133271 retrocopy



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