RetrogeneDB ID: | retro_mmus_1252 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:19290530..19291146(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Akr1b3 | ||
Ensembl ID: | ENSMUSG00000001642 | ||
Aliases: | Akr1b3, ALR2, AR, Ahr-1, Ahr1, Akr1b1, Aldor1, Aldr1 | ||
Description: | aldo-keto reductase family 1, member B3 (aldose reductase) [Source:MGI Symbol;Acc:MGI:1353494] |
Percent Identity: | 81.04 % |
Parental protein coverage: | 65.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LIHWPTGFKPGPDYFPLDASGNVIPSDT-DFVDTWT-AMEQLVDEGLVKTIGVSNFNPLQIERILNKPGL |
L.HWPTGFKPGPDYFPLDASGNVIPSDT..FVDTWT.AMEQLVD.GLV..I..SNFNPLQ.E.ILNKPGL | |
Retrocopy | LTHWPTGFKPGPDYFPLDASGNVIPSDT<NFVDTWT<AMEQLVDGGLVRAISISNFNPLQTESILNKPGL |
Parental | KYKPAVNQIEC-HPYLTQEKLIEYCHSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKYNKTT |
KYKP.VNQI....PYLTQEKLIEYCH.KGIV.TAYSPLGSPDRP.AKPEDPSLLE..RIKAIA.KYNKTT | |
Retrocopy | KYKPVVNQIKFDNPYLTQEKLIEYCHCKGIVETAYSPLGSPDRPRAKPEDPSLLENSRIKAIADKYNKTT |
Parental | AQVLIRFPIQRNLVVIPKSVTPVRIAENLKVFDFEVSSEDMATLLSYNRNWRVCALMSCAKHKDYPFHAE |
A.VLI.FPIQRNLVV.PKSVTP..IAEN.KVFD.E.SS..M.TLLSYNR.WRV...M.CAKH.DYPFH.E | |
Retrocopy | ARVLIQFPIQRNLVVMPKSVTPASIAENFKVFDSELSSKVMTTLLSYNRKWRV---MNCAKHNDYPFHTE |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .99 RPM |
SRP007412_heart | 0 .00 RPM | 59 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .13 RPM |
SRP007412_liver | 0 .00 RPM | 3 .30 RPM |
SRP007412_testis | 0 .50 RPM | 33 .76 RPM |