RetrogeneDB ID: retro_meug_2102

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold90555:2993..3773(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000006571
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UCP2
• Ensembl ID: ENSMEUG00000011481
• Aliases: None
• Description: uncoupling protein 2 (mitochondrial, proton carrier) [Source:HGNC Symbol;Acc:12518]

Sequence

>retro_meug_2102
GCCATCCGAGCTTCCTCTAGCACTGCCCAGTATCGGGGTGTCATGGCACATCTGACCATGGTGAAGACTGAGGTCCCTGG
CAGCCTGTACAACGGGCTGGTGGCTGGGTTGCAGCCCCAGATGAGCTTTGCCTCTGTCCTCATTGGCCTCTATGACTCTG
TCAAACAATTTTACACCAAGGGATCTGAGCATGCAGGCATTGGGAGCCACCTCCTGGCAGGCTGCATCACAGGGGCACTG
GCAGTGGGAGTAGCCCAACCCACAGATGTGGTGAAGGTACGTTTCCAGGCCCAGGCTCGTGCATGTGGCAGCTGGAGATA
CCAGGGTACAGTGGATGCTTACAAGACTATTGCCCGAGAGGAGGGCCTTCGGGGCTTATGGAAAGAAACTTCACCCAATG
TCTCCCGCAATGCTATTGTCAACTGTGCTGAGCTGGTGACCTATGATATCATCAAAGATGCCCTTCTGAAGGCCCACCTC
ATGACTGATGACCTTCCATGCCACTTCACATCAGCCTTTGGGGCTGGCTTCTGCACCACCATCATTGCTTCCCCTGTGGA
CGTGGTCAAGACAAGATACATGAACTCTGCCGCGGGCCAGTATGCCAGTGCTGGCCACTGCGCCCTCACCATGCTTCGGA
AGGAGGGACCCCAAGCCTTCTACAAAGGGTTTATGCCTTCCTTCCTCCGCTTGGGCTCCTGGAATGTAGTGATTTTTGTC
ACCTATGAGCAACTGAAACGGGCCCTGATGGCCGCTCGCACTTCCCGGGAAGCTCCCTTC

Alignment

ORF - retro_meug_2102 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.25 %
• Parental protein coverage: 84.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AIRASSSTAQYRGVMGTILTMVKTEGPGSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS
          AIRASSSTAQYRGVM...LTMVKTE.PGSLYNGLVAGLQ.QMSFASV.IGLYDSVKQFYTKGSEHAGIGS
Retrocopy AIRASSSTAQYRGVMAH-LTMVKTEVPGSLYNGLVAGLQPQMSFASVLIGLYDSVKQFYTKGSEHAGIGS

Parental  RLLAGCTTGALAVGVAQPTDVVKVRFQAQARAGGSRRYQGTVDAYKTIAREEGLRGLWKGTSPNVARNAI
          .LLAGC.TGALAVGVAQPTDVVKVRFQAQARA.GS.RYQGTVDAYKTIAREEGLRGLWK.TSPNV.RNAI
Retrocopy HLLAGCITGALAVGVAQPTDVVKVRFQAQARACGSWRYQGTVDAYKTIAREEGLRGLWKETSPNVSRNAI

Parental  VNCAELVTYDIIKDALLKAHLMTDDLPCHFTSAFGAGFCTTIIASPVDVVKTRYMNSAVGQYASAGHCAL
          VNCAELVTYDIIKDALLKAHLMTDDLPCHFTSAFGAGFCTTIIASPVDVVKTRYMNSA.GQYASAGHCAL
Retrocopy VNCAELVTYDIIKDALLKAHLMTDDLPCHFTSAFGAGFCTTIIASPVDVVKTRYMNSAAGQYASAGHCAL

Parental  TMLRKEGPQAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAACTSREAPF
          TMLRKEGPQAFYKGFMPSFLRLGSWNVV.FVTYEQLKRALMAA.TSREAPF
Retrocopy TMLRKEGPQAFYKGFMPSFLRLGSWNVVIFVTYEQLKRALMAARTSREAPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2102 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2102 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014773	1 retrocopy	retro_etel_2156,
Macropus eugenii	ENSMEUG00000011481	2 retrocopies	retro_meug_2102 , retro_meug_505,
Monodelphis domestica	ENSMODG00000007498	2 retrocopies	retro_mdom_1122, retro_mdom_1703,
Otolemur garnettii	ENSOGAG00000001700	1 retrocopy	retro_ogar_601,