RetrogeneDB ID: retro_meug_505

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold125996:4286..4829(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCP2
• Ensembl ID: ENSMEUG00000011481
• Aliases: None
• Description: uncoupling protein 2 (mitochondrial, proton carrier) [Source:HGNC Symbol;Acc:12518]

Sequence

>retro_meug_505
ATAGCCCAAACCACAGCTCTGCTGAAGATACCTTTCCAGGCCCAGGCTTGTGTAGGAAGCAGTCAGAGCTACCATGGCAT
AGTGGATACCTTTAAGACTATTGCTCCAGAGGAGGGGCTTCAGTGTCTATGGAAAAGAACTTCAACCAATGTCACCTACA
ATGCTACTGTCAACTGTGCTGACCTGGTGATTTTTGATCTCATTAAAGAGGCCATCCTGAAGGCCCACCTCATGACTGAT
GATATTCCATACCACCTCACATTAGCCTTTGAGGCTGGCTTCTACACCACCATCATTGCTTCCCTGGTGGACATGGTCAA
ATGAGATACATGAAGCCTGCCATGGGCCAATATTCCAGTTCTGGCTGCTGTGCCCTCACCATGATTCAGAAAGAAGGACA
TCAAGCCCTTCTACAAAGGGTTCATGCCTTCCTTACTTCCTTCCTTCCACAGTTTGGACTCCTGAAATGTAGTGATATTT
ATTACACACCAGCAACTAAAATTGGCCCTGATGACCACTCACACTTCCTGAGAAGCTGCTTTC

Alignment

ORF - retro_meug_505 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.84 %
• Parental protein coverage: 57.28 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VAQPTDVVKVRFQAQARAGGSRRYQGTVDAYKTIAREEGLRGLWKGTSPNVARNAIVNCAELVTYDIIKD
          .AQ.T...K..FQAQA..G.S..Y.G.VD..KTIA.EEGL..LWK.TS.NV..NA.VNCA.LV..D.IK.
Retrocopy IAQTTALLKIPFQAQACVGSSQSYHGIVDTFKTIAPEEGLQCLWKRTSTNVTYNATVNCADLVIFDLIKE

Parental  ALLKAHLMTDDLPCHFTSAFGAGFCTTIIASPVDVVK-TRYMNSAVGQYASAGHCALTMLRKEGPQA-FY
          A.LKAHLMTDD.P.H.T.AF.AGF.TTIIAS.VD.VK..RYM..A.GQY.S.G.CALTM..KEG.QA.FY
Retrocopy AILKAHLMTDDIPYHLTLAFEAGFYTTIIASLVDMVK<MRYMKPAMGQYSSSGCCALTMIQKEGHQA>FY

Parental  KGFMPSFL----RLGSWNVVMFVTYEQLKRALMAACTSREAPF
          KGFMPS.L.....L.S.NVV.F.T..QLK.ALM...TS.EA.F
Retrocopy KGFMPSLLPSFHSLDS*NVVIFITHQQLKLALMTTHTS*EAAF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_505 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_505 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014773	1 retrocopy	retro_etel_2156,
Macropus eugenii	ENSMEUG00000011481	2 retrocopies	retro_meug_2102, retro_meug_505 ,
Monodelphis domestica	ENSMODG00000007498	2 retrocopies	retro_mdom_1122, retro_mdom_1703,
Otolemur garnettii	ENSOGAG00000001700	1 retrocopy	retro_ogar_601,