RetrogeneDB ID: retro_ogar_601

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:33839423..33839943(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCP2
• Ensembl ID: ENSOGAG00000001700
• Aliases: None
• Description: uncoupling protein 2 (mitochondrial, proton carrier) [Source:HGNC Symbol;Acc:12518]

Sequence

>retro_ogar_601
ATGATTGGGTTCAAGGCCACAGATGTACCCCCTCCTGCCACTGTGAAGTTCCTAGGGGCTGGAACAGCTGCCTGCATTGC
AGATCTCATCACCTTTCTCCAGGATACTGCTGAAGTCTGGCTGCAGATCCAAGGAGAAACTCAGGGGCCAGTGTGTGCTG
CGGTCAGTGCCCAGTACCGTGGTGTGTTGGGCACCATCCTGACCACTGAGGGCCCCTGTAGCCTCTACAACGGGCTGGTT
GCTGGCCTGCAGTGCCAGATGAGCTTTGCCTCTGTTTGCATTGGCCTCTAGACTCTGTCAAGCAGTTCTACACCAATAGC
TCTGAGCATGCCAGCAATTGGAGCCGCCTCCTAGCAGGCAGCACCACAGGTGCCCTGGCAGTGGCTGTGGCCCAGCCCAC
GGATGTGGGAATGGTCAGTTCCAAGCTCAGGCCTGGGCTGGAGGTGGTCGGAGATACTAAAGCACTCTTAATGCCTACGA
GACCATCGCCTGAGAGGAAGGATTCTGGGGACTCTGGAAA

Alignment

ORF - retro_ogar_601 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.36 %
• Parental protein coverage: 56.91 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MVGFKATDVPPTATVKFLGAGTAACIADLITFPLDTAKVRLQIQGETQGPVRATASAQYRGVLGTILTMV
          M.GFKATDVPP.ATVKFLGAGTAACIADLITF..DTA.V.LQIQGETQGPV.A..SAQYRGVLGTILT..
Retrocopy MIGFKATDVPPPATVKFLGAGTAACIADLITFLQDTAEVWLQIQGETQGPVCAAVSAQYRGVLGTILT--

Parental  RTEGPCSLYNGLVAGLQRQMSFASVRIGL-YDSVKQFYTKGSEHASIWSRLLAGSTTGALAVAVAQPTDV
          .TEGPCSLYNGLVAGLQ.QMSFASV.IGL..DSVKQFYT..SEHAS.WSRLLAGSTTGALAVAVAQPTDV
Retrocopy -TEGPCSLYNGLVAGLQCQMSFASVCIGL<LDSVKQFYTNSSEHASNWSRLLAGSTTGALAVAVAQPTDV

Parental  VKV-RFQAQARAGGGRRYQSTVNAYKTIAREEGFWGLWK
          ..V..FQAQA.AGGGRRY.ST.NAY.TIA.EEGFWGLWK
Retrocopy GMV<QFQAQAWAGGGRRY*STLNAYETIA*EEGFWGLWK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_601 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014773	1 retrocopy	retro_etel_2156,
Macropus eugenii	ENSMEUG00000011481	2 retrocopies	retro_meug_2102, retro_meug_505,
Monodelphis domestica	ENSMODG00000007498	2 retrocopies	retro_mdom_1122, retro_mdom_1703,
Otolemur garnettii	ENSOGAG00000001700	1 retrocopy	retro_ogar_601 ,