RetrogeneDB ID: retro_mluc_1005

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:11029359..11029926(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GEMIN2
• Ensembl ID: ENSMLUG00000002619
• Aliases: None
• Description: None

Sequence

>retro_mluc_1005
CAGTTGATGCTTTGGCTGTTGCCAGTGGGGCCCTGTGACTCGACAGAAGGTTTTGACCCCTTTATATTCCCAAGGATTGG
TCAGGAATACTTGAGGCAGATCCACATCAAAGCCACTCAATGTCCAGATGTTGTGGTAGCTGAAATTGACCCAAACAAAG
TTGAGAAGAAACCAAAGGGTGAATATTTCTCTTTCAGGATGGCAACCTGCTCCTGAAGGGTATTAGGCCATACTTCAGTG
GCCACAGCAACAAGTGGCACAATTTTCAACTGTTAAACAGAGTGTGAACAGACATAGAAGTCACTGGAAATGACAACAGT
TGGATAGTAATGTGACCATGTCAAAATGTGAACATGAATAAAGCTGGAAAAATTTTTATCTGGGTGAAAGGTTATATTCT
GGAGGGGCTGTTGGACCAGCTAAAATGAAAGTCCTAGAATAGATCATGTGCAAATTGGTTTTCCTCACTTGCTTAGTATC
AATCAGTCAACAGTAACCAATGTATTGGAATATCTGAGTAATTGGTTTGGAGGAAAAGAGATTACTCCAGGATTGGGAAG
ATGTTTA

Alignment

ORF - retro_mluc_1005 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.77 %
• Parental protein coverage: 73.11 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ELMPRLLPVEPCDLTEGFDPSIPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKK-LKRKQSVNVSLSGCQP
          .LM..LLPV.PCD.TEGFDP.I.PR..QEYLR...I.A.QCPDVVVA.IDP.K.L.R.Q.VN.SLSG.QP
Retrocopy QLMLWLLPVGPCDSTEGFDPFIFPRIGQEYLRQIHIKATQCPDVVVAEIDPNK>LRRNQRVNISLSGWQP

Parental  APQGYSPTLQWQQQQVAQFSTIRQSVNRHRSHWKSQQLDSNVTMPTSEDEEGWKKFCLGERLCSEGAVGP
          AP.GY...LQW.QQQVAQFST..QSVNRHRSHWK.QQLDSNVTM...E.E..WK.F.LGERL.S.GAVGP
Retrocopy APEGY*AILQWPQQQVAQFSTVKQSVNRHRSHWK*QQLDSNVTMSKCEHE*SWKNFYLGERLYSGGAVGP

Parental  AK-NESPGIDYIQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWL
          AK.NESP.ID..QIGFP.LLSI....NQ.TVT.VLEYLSNWFG....TP.LGR.L
Retrocopy AK<NESPRIDHVQIGFPHLLSI----NQSTVTNVLEYLSNWFGGKEITPGLGRCL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1005 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016248	1 retrocopy	retro_cjac_2630,
Dasypus novemcinctus	ENSDNOG00000018278	1 retrocopy	retro_dnov_1040,
Homo sapiens	ENSG00000092208	1 retrocopy	retro_hsap_455,
Gorilla gorilla	ENSGGOG00000016691	2 retrocopies	retro_ggor_1844, retro_ggor_438,
Microcebus murinus	ENSMICG00000004811	1 retrocopy	retro_mmur_1221,
Myotis lucifugus	ENSMLUG00000002619	1 retrocopy	retro_mluc_1005 ,
Mus musculus	ENSMUSG00000060121	1 retrocopy	retro_mmus_354,
Pongo abelii	ENSPPYG00000005764	1 retrocopy	retro_pabe_278,
Pan troglodytes	ENSPTRG00000006291	1 retrocopy	retro_ptro_342,