RetrogeneDB ID: | retro_ptro_342 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:131964901..131965405(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SIP1 | ||
Ensembl ID: | ENSPTRG00000006291 | ||
Aliases: | SIP1, GEMIN2 | ||
Description: | None |
Percent Identity: | 77.91 % |
Parental protein coverage: | 60.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFST-VRQNVNKHRSHWKSQQLDSNVTMPKSEDEEG |
KLKRKQ.V..SL.GCQPAPEGYSP.LQWQ...VA.FST.VRQNV.KHRSHWKS.QLDSNVTMPKS.DEEG | |
Retrocopy | KLKRKQGVKVSLLGCQPAPEGYSPILQWQ*K-VAPFST<VRQNVHKHRSHWKSRQLDSNVTMPKSKDEEG |
Parental | WKKFCLGEKLCADGAVGPA-TNESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELG |
.KKFCL.E.L.A.G.V....TNESP.I.Y.QIGFPPL.SI.SRMNQ.TV..VLEYLSNWFGERDFT..L. | |
Retrocopy | *KKFCLSESLYA-GVVTDS>TNESPRINYIQIGFPPLVSIASRMNQTTVATVLEYLSNWFGERDFTLDLR |
Parental | RWLYALLACLEKPLLPEAHSLIRQLARRCSEV |
RWLY.LLACLEKPLL.E.HSLI.QLARRCSEV | |
Retrocopy | RWLYVLLACLEKPLLHEVHSLIQQLARRCSEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .52 RPM |
SRP007412_heart | 0 .00 RPM | 2 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .69 RPM |
SRP007412_liver | 0 .00 RPM | 1 .90 RPM |
SRP007412_testis | 0 .21 RPM | 9 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_455 |
Gorilla gorilla | retro_ggor_438 |
Pongo abelii | retro_pabe_278 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016248 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018278 | 1 retrocopy | |
Homo sapiens | ENSG00000092208 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016691 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004811 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002619 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060121 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005764 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006291 | 1 retrocopy |
retro_ptro_342 ,
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