RetrogeneDB ID: | retro_mmus_354 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:112151088..112151753(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gemin2 | ||
Ensembl ID: | ENSMUSG00000060121 | ||
Aliases: | None | ||
Description: | gem (nuclear organelle) associated protein 2 [Source:MGI Symbol;Acc:MGI:1913853] |
Percent Identity: | 83.56 % |
Parental protein coverage: | 83.27 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | QIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAHFSTVRQSVHKHRNHWKS |
.IEAAQCPDVV.AQ.DP.KLK...SVNISLSGCQPAPEGY.PTLQW.QQ.VAHFSTVRQSV.KHRNHWKS | |
Retrocopy | RIEAAQCPDVVIAQTDPNKLKKN*SVNISLSGCQPAPEGYYPTLQWHQQ-VAHFSTVRQSVYKHRNHWKS |
Parental | QQLDSNVAMPKSEDEEGWKKFCLGERLCAEGATGPSTEESPGIDYVQVGFPPLLSIVSRMNQTTITSVLE |
Q.LDSNVAMPKSEDEEGWK.FCLGERLCAEGAT.PST..SPGIDYVQVGF.P.LSI.SRMNQ.TIT..LE | |
Retrocopy | QHLDSNVAMPKSEDEEGWKNFCLGERLCAEGATEPSTDKSPGIDYVQVGFLPWLSILSRMNQATITNILE |
Parental | YLSN-WFGERDFTPELGRWFYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVGSKDDERVPALNLLICL |
YLSN...GERDFTP.LG..FYALLACLEKPLLPE...LIRQL..RCSEVRLLVGSK.D.RV.ALNLLICL | |
Retrocopy | YLSN<LIGERDFTP*LGG*FYALLACLEKPLLPEVY*LIRQLT-RCSEVRLLVGSKEDQRV*ALNLLICL |
Parental | VSRYFDQRDLADEPS |
VSRYFDQ.DLADEPS | |
Retrocopy | VSRYFDQHDLADEPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .30 RPM |
SRP007412_heart | 0 .00 RPM | 4 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .93 RPM |
SRP007412_liver | 0 .00 RPM | 11 .03 RPM |
SRP007412_testis | 0 .00 RPM | 8 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016248 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018278 | 1 retrocopy | |
Homo sapiens | ENSG00000092208 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016691 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004811 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002619 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060121 | 1 retrocopy |
retro_mmus_354 ,
|
Pongo abelii | ENSPPYG00000005764 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006291 | 1 retrocopy |