RetrogeneDB ID:

retro_mluc_1275

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429813:4059979..4061102(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000025616
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000016102
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1275
ATGTCTTCTCACAAAGGACGGGTGGTGGCACTGGGCAATGGAGCTCCTGCCAGTAAGAGGGAGACTGACACGGAGCTGGC
TGAACTGGGACTCCTGCTAGAAGAGAAGGGCAAACAGGGAACCGCTGACCCAGCCAAAGCTGAAGAAGAGCAGGCATGCC
CAGTGCCCCAGGAGGAGGAGGAGGAGGTGAGGGTGCTGACACTTCCCCTGCAAGCACATCATGCCATGGAGAAGATGGGG
GAGTTCGTGTATAAGGTCTGGGAGGGATGCCGGAGGGTCCTCCCGTATTATGTGCTCCCCGACTGGCTGAAGGACAACGA
TTACCTGCTCCACGGCCACAGGCCGCCCAGGCCCTCCTTCCGGGCCTGCTTCAGGGGCATCTTCCGCATCCACACAGAGA
CCAGCAATATCTGGGCCCATCTGCTTGGTTTTGTGCTGTTTCTGTTACTGGGAATCTTGAACTTGCTGAGAAAACATGTA
CTTCCTGGCCCCCTGCAGGAGAGGTGGTGTTTGGGATGTTCTTCCTGGGCGTGATGCTCTGCCTCAGCTTCTCCTGGCTC
TTTCACACCGTCTACCATCACTCAGAGAAAGTCTCTTGGACTTTTTCCAAACTGGATTATTCAGGGATTGCTCTACTGAT
TGCGGGGAGCTTTGTCCCCTGGCTCTATTACTCCTTCTACTGCTCCGCACAGTCACGGCTCATCTACCTCTCCATCATCT
GCGTCCTGGGCATTTCCGCCGTCATTGTGGCACAGTGGGGCCGGTTTGCCACTCTAAACACCGGCAGACAAGAGCAGGGG
TGTTCCTGGGCCCGGGCCTGGGCTTGAGCGGCGATGTGCCCGCTGTGCACTTTACGATCTCCGAGGGCTTTGTCAAGGCC
AGCACTGTGGGCCAGATGGGCTGCTTCTTCCTCATGGCTGTGATGTTCATCACCCGGGCGGGCGTCTTTGCTGATCGGAT
TCCTGAGCGCTTCTTTCCTGGAAAGTTTGACACATGGTTCCAGTCGCATCAGATTTTTCACGTCCTGGTGGTGGCAGCAG
CCTTTGTCCACTTCCACGGGGTCTCCAACCTTCAGGAACTCCGCGGCGGCCTGGAAGGCGGCTGTACTGCTGACTGTCTT
CTC

ORF - retro_mluc_1275 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.43 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSSHKAPVVAQGNGAPASNRETDTVELAELGPLLEEKGKRGIADPAKAEEEQACPVPQEEEEEVRVLTLP
MSSHK..VVA.GNGAPAS.RETDT.ELAELG.LLEEKGK.G.ADPAKAEEEQACPVPQEEEEEVRVLTLP
RetrocopyMSSHKGRVVALGNGAPASKRETDT-ELAELGLLLEEKGKQGTADPAKAEEEQACPVPQEEEEEVRVLTLP
ParentalLQAHHAMEKMEEFVYKVWEGRWRVIPYDVLPDWLKDNDYLLHGHRPPMPSFRACFRSIFRIHTETGNIWT
LQAHHAMEKM.EFVYKVWEG..RV.PY.VLPDWLKDNDYLLHGHRPP.PSFRACFR.IFRIHTET.NIW.
RetrocopyLQAHHAMEKMGEFVYKVWEGCRRVLPYYVLPDWLKDNDYLLHGHRPPRPSFRACFRGIFRIHTETSNIWA
ParentalHLLGFVLFLFLGILTMLRPNMYFMAPLQEK-VVFGMFFLGAVLCLSFSWLFHTVYCHSEKVSRTFSKLDY
HLLGFVLFL.LGIL..LR.......PLQE..VVFGMFFLG..LCLSFSWLFHTVY.HSEKVS.TFSKLDY
RetrocopyHLLGFVLFLLLGILNLLRKHV-LPGPLQER<VVFGMFFLGVMLCLSFSWLFHTVYHHSEKVSWTFSKLDY
ParentalSGIALLIMGSFVPWLYYSFYCSPQPRLIYLSIICVLGISAIIVAQWDRFAT-PKHRQTRAGVFL--GLGL
SGIALLI.GSFVPWLYYSFYCS.Q.RLIYLSIICVLGISA.IVAQW.RFAT..KHRQTRAGVFL..GLGL
RetrocopySGIALLIAGSFVPWLYYSFYCSAQSRLIYLSIICVLGISAVIVAQWGRFAT<SKHRQTRAGVFLGPGLGL
ParentalSGVVPTMHFTIAEGFVKATTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVA
SG.VP..HFTI.EGFVKA.TVGQMG.FFLMAVM.IT.AG..A.RIPERFFPGKFD.WFQSHQIFHVLVVA
RetrocopySGDVPAVHFTISEGFVKASTVGQMGCFFLMAVMFITRAGVFADRIPERFFPGKFDTWFQSHQIFHVLVVA
ParentalAAFVHFYGVSNLQEFRYGLEGGCTDDSLL
AAFVHF.GVSNLQE.R.GLEGGCT.D.LL
RetrocopyAAFVHFHGVSNLQELRGGLEGGCTADCLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1275 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 42 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000121991 retrocopy
retro_amel_1853,
Choloepus hoffmanni ENSCHOG000000064508 retrocopies
retro_chof_1127, retro_chof_1222, retro_chof_1917, retro_chof_2218, retro_chof_2380, retro_chof_471, retro_chof_749, retro_chof_995,
Callithrix jacchus ENSCJAG000000062683 retrocopies
retro_cjac_2262, retro_cjac_740, retro_cjac_741,
Cavia porcellus ENSCPOG000000004821 retrocopy
retro_cpor_470,
Dipodomys ordii ENSDORG000000068761 retrocopy
retro_dord_19,
Felis catus ENSFCAG000000135651 retrocopy
retro_fcat_1514,
Loxodonta africana ENSLAFG000000035201 retrocopy
retro_lafr_277,
Macropus eugenii ENSMEUG000000154391 retrocopy
retro_meug_516,
Microcebus murinus ENSMICG000000079423 retrocopies
retro_mmur_1199, retro_mmur_184, retro_mmur_764,
Myotis lucifugus ENSMLUG000000022111 retrocopy
retro_mluc_66,
Myotis lucifugus ENSMLUG00000016102 2 retrocopies
retro_mluc_1275 , retro_mluc_200,
Macaca mulatta ENSMMUG000000070461 retrocopy
retro_mmul_1322,
Mustela putorius furoENSMPUG000000112151 retrocopy
retro_mputfur_550,
Otolemur garnettii ENSOGAG000000338214 retrocopies
retro_ogar_1558, retro_ogar_1624, retro_ogar_2838, retro_ogar_783,
Ochotona princeps ENSOPRG000000045283 retrocopies
retro_opri_101, retro_opri_1050, retro_opri_392,
Pongo abelii ENSPPYG000000003421 retrocopy
retro_pabe_1072,
Sorex araneus ENSSARG000000076801 retrocopy
retro_sara_25,
Ictidomys tridecemlineatus ENSSTOG000000154593 retrocopies
retro_itri_215, retro_itri_257, retro_itri_512,
Tupaia belangeri ENSTBEG000000151492 retrocopies
retro_tbel_1501, retro_tbel_1804,
Tarsius syrichta ENSTSYG000000014911 retrocopy
retro_tsyr_125,
Tursiops truncatus ENSTTRG000000063812 retrocopies
retro_ttru_1055, retro_ttru_863,


Copyright © RetrogeneDB 2014-2017