Parental gene: | ENSSTOG00000015459 |
| Aliases: | None |
| Description: | None |
| Organism: | Squirrel (Ictidomys tridecemlineatus) |
| Coordinates: | JH393377.1:1666080..1674173(+) |
>ENSSTOG00000015459
ATGTCTTCCCACAAAGGAACTGTGGTGGCACAGGGCAACAGGGCTCCTGCCAGTAACAGGGAAACTGACTCAGTGGAACT
GGCTGAACTGGGACCCCTGCTAGAAGAGAAGGGCAAGCGGGTAATTGCCAACCCAAACAAGGCTGAAGAAGAACAAACAT
GCCCAGTGCCCCAGGAAGAAGAGGAGGAGGTACGGGTACTGACACTTCCCCTGCAGGCCCACCATGCCATGGAGAAGATG
GAGGAGTTCGTATATAAGGTCTGGGAGGGGCGTTGGAGGGTCATCCCATATGATGTACTTCCTGACTGGCTGAAGGACAA
TGACTATCTGCTACATGGCCACAGACCACCCATGCCCTCCTTTCGTGCTTGCTTCAAGAGCATCTTCCGCATCCACACTG
AAACTGGCAACATCTGGACCCATCTGCTTGGTTTCGTACTATTTCTCTTTTTGGGAATCTTGACCATGCTTAGACCAAAT
ATGTACTTCATGGCCCCTCTTCAGGAGAAAGTGGTTTTTGGCATGTTCTTTTTGGGTGCAGTGCTCTGCCTCAGCTTCTC
CTGGCTCTTCCACACCGTCTATTGTCATTCAGAGAAAGTTTCCCGGACTTTTTCCAAACTGGACTATTCAGGGATTGCTC
TACTGATTATGGGGAGCTTTGTCCCCTGGCTCTATTACTCCTTCTACTGCTCCCCACAGCCTCGGCTCATCTACCTCTCC
ATCGTCTGTGTCCTGGGCATCTCTGCCATCATTGTGGCACAGTGGGACCGGTTTGCCACTCCTAAACACCGGCAAACAAG
AGCGGGAGTGTTCCTGGGACTTGGCTTGAGTGGTGTTGTGCCCACCATGCACTTTACTATCGCTGAGGGCTTTGTCAAGG
CCACCACAGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCTGGCCTTTATGCTGCTCGG
ATTCCTGAGCGCTTCTTTCCGGGAAAGTTTGACATATGGTTCCAGTCCCATCAGATTTTCCACGTCCTGGTGGTGGCCGC
AGCCTTTGTCCACTTCTATGGGGTCTCCAACCTTCAGGAATTCCGTTATGGCCTGGAAGGTGGCTGTACTGATGACTCCC
TTCTCTGA
ATGTCTTCCCACAAAGGAACTGTGGTGGCACAGGGCAACAGGGCTCCTGCCAGTAACAGGGAAACTGACTCAGTGGAACT
GGCTGAACTGGGACCCCTGCTAGAAGAGAAGGGCAAGCGGGTAATTGCCAACCCAAACAAGGCTGAAGAAGAACAAACAT
GCCCAGTGCCCCAGGAAGAAGAGGAGGAGGTACGGGTACTGACACTTCCCCTGCAGGCCCACCATGCCATGGAGAAGATG
GAGGAGTTCGTATATAAGGTCTGGGAGGGGCGTTGGAGGGTCATCCCATATGATGTACTTCCTGACTGGCTGAAGGACAA
TGACTATCTGCTACATGGCCACAGACCACCCATGCCCTCCTTTCGTGCTTGCTTCAAGAGCATCTTCCGCATCCACACTG
AAACTGGCAACATCTGGACCCATCTGCTTGGTTTCGTACTATTTCTCTTTTTGGGAATCTTGACCATGCTTAGACCAAAT
ATGTACTTCATGGCCCCTCTTCAGGAGAAAGTGGTTTTTGGCATGTTCTTTTTGGGTGCAGTGCTCTGCCTCAGCTTCTC
CTGGCTCTTCCACACCGTCTATTGTCATTCAGAGAAAGTTTCCCGGACTTTTTCCAAACTGGACTATTCAGGGATTGCTC
TACTGATTATGGGGAGCTTTGTCCCCTGGCTCTATTACTCCTTCTACTGCTCCCCACAGCCTCGGCTCATCTACCTCTCC
ATCGTCTGTGTCCTGGGCATCTCTGCCATCATTGTGGCACAGTGGGACCGGTTTGCCACTCCTAAACACCGGCAAACAAG
AGCGGGAGTGTTCCTGGGACTTGGCTTGAGTGGTGTTGTGCCCACCATGCACTTTACTATCGCTGAGGGCTTTGTCAAGG
CCACCACAGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCTGGCCTTTATGCTGCTCGG
ATTCCTGAGCGCTTCTTTCCGGGAAAGTTTGACATATGGTTCCAGTCCCATCAGATTTTCCACGTCCTGGTGGTGGCCGC
AGCCTTTGTCCACTTCTATGGGGTCTCCAACCTTCAGGAATTCCGTTATGGCCTGGAAGGTGGCTGTACTGATGACTCCC
TTCTCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012199 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000006450 | ortholog_one2many | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006268 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000000482 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000006876 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000013565 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003520 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000015439 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007942 | ortholog_one2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016102 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000007046 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011215 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000033821 | ortholog_one2one | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000004528 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000000342 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000007680 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000015149 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000001491 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000006381 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_itri_215 | 84.27 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_itri_257 | 60.18 | 57.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_itri_512 | 73.13 | 53.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSTOG00000015459 retrocopies