RetrogeneDB ID: | retro_pabe_1072 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:102399342..102400012(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ADIPOR1 | ||
Ensembl ID: | ENSPPYG00000000342 | ||
Aliases: | None | ||
Description: | adiponectin receptor 1 [Source:HGNC Symbol;Acc:24040] |
Percent Identity: | 69.36 % |
Parental protein coverage: | 58.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 12 |
Parental | LHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGFVLFLF-LGILTMLRPNMYFM-APLQEKVVFGMF-F |
LHGHRPPMPSF.ACFKSIF..H.ETGNIWTH.LGF.LFLF.LGILTMLR.NMYFM.APLQEKVV.G...F | |
Retrocopy | LHGHRPPMPSFWACFKSIFHTHVETGNIWTHRLGFMLFLF<LGILTMLRLNMYFM<APLQEKVVWGRL<F |
Parental | LGAVLCLSFSWLFHTVYCHSEKVS-RTF-SKLDYSGIALL-IMGSFVPWLYYSFYCSPQ-PRLIYLSIVC |
...VLCLS.SWLFHTVYCHSE..S.R.F.SKLDY..IALL.I.....P.L.YS..CSPQ.P..I.L..VC | |
Retrocopy | VVIVLCLSSSWLFHTVYCHSEEKSLRLF<SKLDYTAIALL>ITEELCPLLCYS-HCSPQPPGFICLFFVC |
Parental | VL-GISAIIVAQW-DRFAT-PKHRQTRAGVFL-GLGLSGVV-PTMHFT-IAEGFVKATTVGQMGWFFLM- |
VL.GISAI.VAQW.D.F.T.PKH.QT..G..L.GL.LS..V.P.MHF..I.E.FV.A...G.MGW.FL.. | |
Retrocopy | VL>GISAIMVAQW>DQFPT>PKHQQTQQGALL>GLSLSVTV>PVMHFS>ITEAFVRASAMGWMGWSFLT> |
Parental | AVMYITGAGLYAARIPERFFPGKFD |
AV..ITGAGLYAARIPE.FFPGKFD | |
Retrocopy | AVLHITGAGLYAARIPECFFPGKFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 48 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .79 RPM |
SRP007412_heart | 0 .00 RPM | 39 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 48 .63 RPM |
SRP007412_liver | 0 .00 RPM | 50 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1322 |
Callithrix jacchus | retro_cjac_504 |