Parental gene:

ADIPOR1, ENSCJAG00000006268

Aliases:None
Description:adiponectin receptor 1 [Source:HGNC Symbol;Acc:24040]
Organism:Marmoset (Callithrix jacchus)
Coordinates:19:24641179..24651146(-)


>ENSCJAG00000006268
ATGTCTTCCCACAAAGGATCTGTGGTGGCACAGGGGAATGGGGCTCCTGCCAGTAACAGGGAAACTGACACGGTGGAACT
GGCTGAACTGGGACCCCTGCTAGAAGAGAAGGGCAAACGGGTAATCTCCAACCCTACCAAAGCTGAAGAAGAGCAAACAT
GCCCAGTGCCCCAGGAAGAAGAGGAGGAGGTGCGGGTACTGACACTTCCGCTGCAAGCCCACCATGCCATGGAGAAGATG
GAGGAGTTTGTGTACAAGGTGTGGCCAATGAGCTTCTGCCCTGGAAGGAGGAGGATTCTGTATGTTTNNNNNNNNNNCAA
TGACTATCTGCTACATGGCCATAGACCACCCATGCCCTCTTTTCGGGCTTGCTTCAAGAGTATCTTCCGCATCCATACAG
AAACTGGCAACATCTGGACCCATCTGCTTGGTTTTGTGCTGTTTCTCTTTTTGGGAATCTTGACCATGCTCAGACCAAAT
ATGTACTTCATGGCCCCTCTACAGGAGAAGGTGGTTTTTGGGATGTTCTTCTTGGGTGCAGTGCTCTGCCTCAGCTTCTC
CTGGCTCTTTCATACCGTGTATTGTCATTCAGAGAAAGTCTCTCGGACTTTTTCCAAACTGGACTATTCAGGGATTGCTC
TTCTAATTATGGGGAGCTTTGTCCCCTGGCTCTATTATTCCTTCTACTGCTCCCCACAGCCACGGCTCATCTACCTCTCC
ATCGTCTGCGTCCTGGGCATTTCTGCCATCATTGTGGCACAGTGGGACCGGTTTGCCACTCCTAAGCACCGGCAGACAAG
AGCAGGGGTGTTCCTGGGACTTGGCTTGAGCGGTGTCGTGCCCACCATGCACTTTACTATTGCTGAGGGCTTTGTCAAGG
CCACCACAGTGGGCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCGGAGCTGGCCTTTATGCTGCTCGA
ATTCCTGAGCGCTTCTTTCCTGGAAAATTTGACATATGGTTCCAGTCTCATCAGATTTTCCATGTCCTGGTGGTGGCAGC
AGCCTTTGTCCACTTCTATGGGGTCTCCAACCTTCAGGAATTCCGTTATGGCCTAGAAGGTGGCTGTACTGATGACACCC
TTCTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 31 .83 RPM
SRP051959_skeletal_muscle 31 .47 RPM
SRP051959_lymph_node 19 .68 RPM
SRP051959_lung 30 .99 RPM
SRP051959_liver 34 .18 RPM
SRP051959_kidney 34 .37 RPM
SRP051959_heart 28 .87 RPM
SRP051959_colon 20 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012199 ortholog_one2one 1 retrogene
Choloepus hoffmanni ENSCHOG00000006450 ortholog_one2one 8 retrogenes
Callithrix jacchus ENSCJAG00000000683 within_species_paralog 3 retrogenes
Cavia porcellus ENSCPOG00000000482 ortholog_one2one 1 retrogene
Dipodomys ordii ENSDORG00000006876 ortholog_one2one 1 retrogene
Felis catus ENSFCAG00000013565 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000003520 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000015439 ortholog_one2one 1 retrogene
Microcebus murinus ENSMICG00000007942 ortholog_one2one 3 retrogenes
Myotis lucifugus ENSMLUG00000016102 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000007046 ortholog_one2one 1 retrogene
Mustela putorius furo ENSMPUG00000011215 ortholog_one2one 1 retrogene
Otolemur garnettii ENSOGAG00000033821 ortholog_one2one 4 retrogenes
Ochotona princeps ENSOPRG00000004528 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000000342 ortholog_one2one 1 retrogene
Sorex araneus ENSSARG00000007680 ortholog_one2one 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000015459 ortholog_one2many 3 retrogenes
Tupaia belangeri ENSTBEG00000015149 ortholog_one2one 2 retrogenes
Tarsius syrichta ENSTSYG00000001491 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000006381 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_740 74.64 74.73
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2. retro_cjac_741 71.43 74.73
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3. retro_cjac_2262 87.12 68.27
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Download FASTA sequences of all ENSCJAG00000006268 retrocopies