RetrogeneDB ID:

retro_ttru_863

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_400:106710..107823(+)
Located in intron of:ENSTTRG00000003821
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ADIPOR1
Ensembl ID:ENSTTRG00000006381
Aliases:None
Description:adiponectin receptor 1 [Source:HGNC Symbol;Acc:24040]


Retrocopy-Parental alignment summary:






>retro_ttru_863
ATGTCTTCTCACAAAGGACCTGTGGTGGCCCAGGGCAGTGGGGCTCCTGCCGGGAACAGGGAGGCTGACACAGCAGAGCT
GGCTGAGCTGGGCCCCCTGCTAGAGGAGCTAGGCAAGCAGGGCATCGCCAGCCCAAGCAAAGCTGAAGAAGAGCAGGCAT
GCCCAGTGCCTCAGGAAGAGGAGGAGGAGGGGTGGGTGCTGACACTTCCCCTGCAAGCCCACCATGCCACGGAGAAGATG
GAGGAGTTTGTGCATAAGGTCTGGGAGGGGCACTGGAGGGTCATCCGCACAACGTGCTCCCCAACTGGCTGAAGGACAAT
GACTACCTGCTGCACGGCCACAGGCCGCCCATGCCCTCCTTCCGGGCCTGCTTCAAGAGCATCTTCCGCATCCACATGGA
GACGGGCAACTTCTGGACCCACCTGCTTGGTTTTGTGACGTTTCACTTTCTGGGAATCCTGACCATGCTGAGACCAAACA
CGTACTTCATGACCCCTCTTCAGGAGAAGGTGGTGCTCGGGATGTTCTTCCTGGGCGCGGGGCTCTGCCTCAGCTTCTTC
TGGCTCTTTCACACTGTCTATTATCACTCAGAGAAGGTCTCTCAGACCTTTTCCCAACTGGATTATTCAGGGATTGCCCT
GCTGATTACGGGGGAGCTTTGTCCCCTGGCTCTGTTACTCCTTCTGCTCCCCACAGCCACGGCTCATCTACCTCTCCAGC
GTGGGCACCTCTGCCATCATTGTGCTGCAGTGGCACCGGTTTGCCACTCCTAAGCACCAGCAGACAAGAGCAGGGGTGTT
CCTGGGGCTTGGCTTGAGCGGCATCGTGCCCACCATGCACTTTACAATCGTGGAGGGCTTCGTCAAGGCCACCACGGTGG
GCCAGATGGGCTGGTTCTTCCTCATGGCTGTGATGTACATCACCAGAGCTGGCCTTTATGCCGCACGGATTCCCGAGCAC
TTCTTCCCTGGAAAATCCGACATGTGGTTCTAGTCTCATCAGATCTTCCACGTCCTGGTGGTAGCAGCCACCTTCGTCCA
CTGCTACGGGGTCTCCAACTTTCAGGAGTTCCGATATGGCCTGGAAGGGGGCTGTACTGACAACTCCCTCCTC

ORF - retro_ttru_863 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.94 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSSHKGPVVAQGSGAPAGNREADTVELAELGPLLEEQGKRGVASPTKAEEERARAVPQEEEEEVRVLTLP
MSSHKGPVVAQGSGAPAGNREADT.ELAELGPLLEE.GK.G.ASP.KAEEE.A..VPQEEEEE..VLTLP
RetrocopyMSSHKGPVVAQGSGAPAGNREADTAELAELGPLLEELGKQGIASPSKAEEEQACPVPQEEEEEGWVLTLP
ParentalLQAHHAMEKMEEFVYKVWEGRWRVI-PYDVLPDWLQDNDYLLHGHRPPMPSFRACFQSIFRIHTETGNIW
LQAHHA.EKMEEFV.KVWEG.WRVI.P..VLP.WL.DNDYLLHGHRPPMPSFRACF.SIFRIH.ETGN.W
RetrocopyLQAHHATEKMEEFVHKVWEGHWRVI<PHNVLPNWLKDNDYLLHGHRPPMPSFRACFKSIFRIHMETGNFW
ParentalTHLLGFVLFLFLGILTMLRPNMYFMAPLQEKVVFGMFFLGAVLCLSFSWLFHTVYCHSEKVSRTFSKLDY
THLLGFV.F.FLGILTMLRPN.YFM.PLQEKVV.GMFFLGA.LCLSF.WLFHTVY.HSEKVS.TFS.LDY
RetrocopyTHLLGFVTFHFLGILTMLRPNTYFMTPLQEKVVLGMFFLGAGLCLSFFWLFHTVYYHSEKVSQTFSQLDY
ParentalSGIALLIMG-SFVPWLYYSFYCSPQPRLIYLSSVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSG
SGIALLI.G.SFVPWL.YSF.CSPQPRLIYLSSV...G.SAIIV.QW.RFATPKH.QTRAGVFLGLGLSG
RetrocopySGIALLITG>SFVPWLCYSF-CSPQPRLIYLSSV---GTSAIIVLQWHRFATPKHQQTRAGVFLGLGLSG
ParentalVVPTMHFTIAEGFVKATTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVAAA
.VPTMHFTI.EGFVKATTVGQMGWFFLMAVMYIT.AGLYAARIPE.FFPGK.D.WF.SHQIFHVLVVAA.
RetrocopyIVPTMHFTIVEGFVKATTVGQMGWFFLMAVMYITRAGLYAARIPEHFFPGKSDMWF*SHQIFHVLVVAAT
ParentalFVHFYGVSNLQEFRYGLEGGCTDDSLL
FVH.YGVSN.QEFRYGLEGGCTD.SLL
RetrocopyFVHCYGVSNFQEFRYGLEGGCTDNSLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_863 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_863 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000121991 retrocopy
retro_amel_1853,
Choloepus hoffmanni ENSCHOG000000064508 retrocopies
retro_chof_1127, retro_chof_1222, retro_chof_1917, retro_chof_2218, retro_chof_2380, retro_chof_471, retro_chof_749, retro_chof_995,
Callithrix jacchus ENSCJAG000000062683 retrocopies
retro_cjac_2262, retro_cjac_740, retro_cjac_741,
Cavia porcellus ENSCPOG000000004821 retrocopy
retro_cpor_470,
Dipodomys ordii ENSDORG000000068761 retrocopy
retro_dord_19,
Felis catus ENSFCAG000000135651 retrocopy
retro_fcat_1514,
Loxodonta africana ENSLAFG000000035201 retrocopy
retro_lafr_277,
Macropus eugenii ENSMEUG000000154391 retrocopy
retro_meug_516,
Microcebus murinus ENSMICG000000079423 retrocopies
retro_mmur_1199, retro_mmur_184, retro_mmur_764,
Myotis lucifugus ENSMLUG000000161022 retrocopies
retro_mluc_1275, retro_mluc_200,
Macaca mulatta ENSMMUG000000070461 retrocopy
retro_mmul_1322,
Mustela putorius furoENSMPUG000000112151 retrocopy
retro_mputfur_550,
Otolemur garnettii ENSOGAG000000338214 retrocopies
retro_ogar_1558, retro_ogar_1624, retro_ogar_2838, retro_ogar_783,
Ochotona princeps ENSOPRG000000045283 retrocopies
retro_opri_101, retro_opri_1050, retro_opri_392,
Pongo abelii ENSPPYG000000003421 retrocopy
retro_pabe_1072,
Sorex araneus ENSSARG000000076801 retrocopy
retro_sara_25,
Ictidomys tridecemlineatus ENSSTOG000000154593 retrocopies
retro_itri_215, retro_itri_257, retro_itri_512,
Tupaia belangeri ENSTBEG000000151492 retrocopies
retro_tbel_1501, retro_tbel_1804,
Tarsius syrichta ENSTSYG000000014911 retrocopy
retro_tsyr_125,
Tursiops truncatus ENSTTRG00000006381 2 retrocopies
retro_ttru_1055, retro_ttru_863 ,


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