RetrogeneDB ID: | retro_mluc_128 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430359:302056..303439(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029812 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSMLUG00000005871 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT |
METEQPEE.F..T.TN.EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT | |
Retrocopy | METEQPEEIFHSTKTNREFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT |
Parental | DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG |
DYNASVSVPDSSGPERIL.ISADIE.IGEILKKIIPTLEEGL.LPSPTATSQLPLESDAVECLNYQHYKG | |
Retrocopy | DYNASVSVPDSSGPERILRISADIEAIGEILKKIIPTLEEGLWLPSPTATSQLPLESDAVECLNYQHYKG |
Parental | SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL |
SDFDCELRLLIHQSLAG.IIGVKGAKIKE.RENTQT.IKLFQECCPHSTDRVVLIGGKPD.VVECIKIIL | |
Retrocopy | SDFDCELRLLIHQSLAGRIIGVKGAKIKEIRENTQTKIKLFQECCPHSTDRVVLIGGKPDKVVECIKIIL |
Parental | DLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDY |
.LISESPIKG.AQPYDPNFYDETYDYGGFTMM.DDRRG.PVGFPMRGR.GFDRMPPGRGG..MPPSRRDY | |
Retrocopy | ELISESPIKGHAQPYDPNFYDETYDYGGFTMMSDDRRGCPVGFPMRGRSGFDRMPPGRGGHLMPPSRRDY |
Parental | DDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAID |
DDMSP.RGPPPPPPGRGG.GGSRARNLPLP..PPPRGGD.MAYDRRGRPGDRYDGMV....DETWDSAID | |
Retrocopy | DDMSPWRGPPPPPPGRGGWGGSRARNLPLPLSPPPRGGDIMAYDRRGRPGDRYDGMV----DETWDSAID |
Parental | TWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS |
.WSPSEWQMAYEPQGGSGYDYSYAGGRGSYG.LGGPIITTQVTIPKDLAGSIIGKGGQRIKQ..HESGAS | |
Retrocopy | AWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGELGGPIITTQVTIPKDLAGSIIGKGGQRIKQTQHESGAS |
Parental | IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF |
IKIDEPL.GSEDRIITI.GT.DQI.NAQYLLQNSVKQYADVEGF | |
Retrocopy | IKIDEPLGGSEDRIITISGTEDQIRNAQYLLQNSVKQYADVEGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021131 | 2 retrocopies | |
Homo sapiens | ENSG00000165119 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000006975 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000015780 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000003074 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005871 | 2 retrocopies |
retro_mluc_128 , retro_mluc_561,
|
Myotis lucifugus | ENSMLUG00000009971 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022760 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001289 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |