RetrogeneDB ID: | retro_sscr_437 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:70918488..70919375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000010221 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSSSCG00000022760 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] |
Percent Identity: | 95.33 % |
Parental protein coverage: | 67.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | METEQRTDNRRNLSHTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAG-AVIGKGGKNIK |
METEQ......N...TETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAG.AVIGKGGKNIK | |
Retrocopy | METEQPEETFPN---TETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAG<AVIGKGGKNIK |
Parental | ALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQ |
ALRTDYNASVSVPDSSGP.RILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQ | |
Retrocopy | ALRTDYNASVSVPDSSGPKRILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQ |
Parental | HYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECI |
HYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKE.RENTQTTIKLFQECCPQSTDRVVLIGGKPDR.VECI | |
Retrocopy | HYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKEPRENTQTTIKLFQECCPQSTDRVVLIGGKPDRDVECI |
Parental | KIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPS |
KIILDLISE.PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPS | |
Retrocopy | KIILDLISELPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPS |
Parental | RRDYDDMSPRRGPPPPPPGR |
RRDYDDMSPRRGPPPPPPGR | |
Retrocopy | RRDYDDMSPRRGPPPPPPGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 14 .20 RPM | 113 .75 RPM |
SRP014902_testis | 22 .91 RPM | 261 .11 RPM |
SRP018288_heart | 25 .43 RPM | 194 .83 RPM |
SRP018288_kidney | 37 .83 RPM | 343 .59 RPM |
SRP018288_liver | 29 .26 RPM | 256 .66 RPM |
SRP018288_lung | 35 .54 RPM | 371 .05 RPM |
SRP018856_adipose | 19 .17 RPM | 309 .97 RPM |
SRP035408_brain | 48 .88 RPM | 219 .43 RPM |
SRP035408_liver | 59 .01 RPM | 204 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000015500 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005871 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022760 | 1 retrocopy |
retro_sscr_437 ,
|
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |