RetrogeneDB ID: | retro_mluc_561 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429768:13431929..13432886(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000028737 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSMLUG00000005871 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.1 % |
Parental protein coverage: | 68.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS |
CELR.LIHQSLAGGIIGVKGAKIKELRE.TQTTIKLFQECCPHSTDRVV.IGGKPDRVVECIKIILDLIS | |
Retrocopy | CELRRLIHQSLAGGIIGVKGAKIKELREDTQTTIKLFQECCPHSTDRVVPIGGKPDRVVECIKIILDLIS |
Parental | ESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMS |
ESPI.GRAQPYD.N.YDETYDYGGFTMMFDDR.GRPVG.PM.GRGGFDRMPPGRGGRPMPPSRRD.DDMS | |
Retrocopy | ESPINGRAQPYDSNIYDETYDYGGFTMMFDDRCGRPVGYPMQGRGGFDRMPPGRGGRPMPPSRRDCDDMS |
Parental | PRR-GPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLM-AYDRRGRPGDRYDGMVGFSADETWDSAIDTW |
PR..GPPPPPPGRGG.GGSRARNLPLPPPPPPRGGDLM.AYDRRGRPGDRYDGMVGFSADETWDSAIDTW | |
Retrocopy | PRE<GPPPPPPGRGGQGGSRARNLPLPPPPPPRGGDLM>AYDRRGRPGDRYDGMVGFSADETWDSAIDTW |
Parental | SPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIK |
SPSEWQ.AYEPQGGSGYDYSYAGGRGSYGDLGGP.ITTQVTIPKDLAGSIIGKGGQRIKQI.HESGASI. | |
Retrocopy | SPSEWQTAYEPQGGSGYDYSYAGGRGSYGDLGGP-ITTQVTIPKDLAGSIIGKGGQRIKQICHESGASIN |
Parental | IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF |
IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV.QYADVEGF | |
Retrocopy | IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVRQYADVEGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021131 | 2 retrocopies | |
Homo sapiens | ENSG00000165119 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000006975 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000015780 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000003074 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005871 | 2 retrocopies |
retro_mluc_128, retro_mluc_561 ,
|
Myotis lucifugus | ENSMLUG00000009971 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021546 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019327 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022760 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001289 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |