RetrogeneDB ID: | retro_mluc_1309 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429817:6131636..6132476(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL1D1 | ||
Ensembl ID: | ENSMLUG00000000784 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.07 % |
Parental protein coverage: | 56.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASTATPASTATPASTSATPAALGQLDEEQTRKAVKTLLAHSRSRKNANGLLLNENENFFLMVVLWKIPSK |
AS....ASTATPASTSATPAALGQLDEEQTRKAVK.LLAHSRSRKNANGLLLNENE..FLMVVLWKIPSK | |
Retrocopy | ASAPPAASTATPASTSATPAALGQLDEEQTRKAVKALLAHSRSRKNANGLLLNENEKNFLMVVLWKIPSK |
Parental | ELRVRLPLPHGIRSDLADVCLFTKDEPNATPEKTERFYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKL |
ELRVRL.LPHGI.SDLA.VCLFTKDEPN.TPEK.E.FYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKL | |
Retrocopy | ELRVRLSLPHGIQSDLAVVCLFTKDEPNVTPEKMEHFYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKL |
Parental | RLLGSFDLFLSDARIRRLLPSHLGRHFYKRKKVPVPVNLKAKNLSQEINSSIGGTVLNISKSGSCSTIRI |
.LLGSF.LFLSDARI.RLLPSHLGRHFYKRKKVP.PVNLKAKNLSQEINSSIGGTVLNISKSGS.STIRI | |
Retrocopy | HLLGSFNLFLSDARIQRLLPSHLGRHFYKRKKVPIPVNLKAKNLSQEINSSIGGTVLNISKSGSYSTIRI |
Parental | GHTGMQVQHIIENILAVTKKLSQKLPEKWESVKLLYVKTERSVSLPIFSSFVSSWGEAKGVNISRLKKEE |
GHTGMQVQ.I.ENILA.TKKLSQKLPEKWESVKLLYVKTERSV.LPIFSSFVSSW.EAKGVNIS.LKK.E | |
Retrocopy | GHTGMQVQNITENILAATKKLSQKLPEKWESVKLLYVKTERSVALPIFSSFVSSWDEAKGVNISSLKKQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018865 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010827 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008375 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010630 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000013664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000784 | 1 retrocopy |
retro_mluc_1309 ,
|
Monodelphis domestica | ENSMODG00000029494 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015151 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048608 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016705 | 1 retrocopy |