Parental gene: | RSL1D1, ENSCPOG00000010630 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_4:30743884..30758109(-) |
>ENSCPOG00000010630
CAGATTAGAAAGGCAGTGGAAGCTTTGTTGACACAGTCGAAATCCAGGAAGAACAAAAATGGATTGCTTTTAAATGAAAA
TGAAAGTTTATTTTTAATGGTGGTGCTGTGGAAAATTCCAGGAAAAGAACTGAAGGTCAAATTGTTGTTGCCTCATCATA
TTCGATCAGACTTGTCAGAAATCTGTTTATTTACCAAGGATGAACTCCAGTCAGCTGAACAGACAGAACGCTTCTATAGA
AAGCTTTTGAACAAGCATGGAATTAAAACAATTTCTCGGATTATCCCTTTCCGAACTTTGAAAACAGAATATAAAGCTTA
TGAATCCAAGCTCCAACTCCTAAATAGTTTTGACTTCTTCCTTACTGATGAAAGAATTAGGCGACTTCTGCCCTCACACA
TAGGGAGACATTTCTATCAAAGGAAAAAAGTTCCAGTATCTGTAAACCTTCTGGCCAAGAATTTATCAGAAGAGATCAAC
AACTCCCTAGGTGGGACTGTCTTAAACATCTCCAAAAGTGGTTCTTGCAGTTCTGTACGCATTGGTCACACTGGAATGCG
GGCTCAAGACATCACTGAAAACATTGTTGCTGTGGCAGAAGGTCTTTCAAAAAAATTGCCAGAGAAGTGGGAAAGTGTGA
AACTCCTGTTCGTGAAAACTGGGAAGTCAGTTTCCCTCCCCATTTTTTCTTCGTTTGTCTCTTGTCAGAATGAAACCAAC
AAAATGTTAATTCGTAAGCTGAAGGAAAAAGAGGCTAAGAGAAAAGAGAAAGAACAAAAACTTCGTGAAAAACGGAAGTT
GAAGAAGGAAAAGAGAAAGTTAAAGGGAAAAGCTAAGAAGGTTACATCAGTCCTAACTAAAGGTGGCGTGGCACCTCAAA
CTAAAGGTGCTTCTGCAAAGAGCCGTAGGTCCCAGAAGAAAAAGACTGGGAAAGTAAAAACCCAAGTTAAAGTGACCAAT
GAATCTGATGATGAAATTCCACAACTGGTACCAATAGGCGAAACTCCAGTAAAAGAAAATGTTGAGGTACAGAAACATAT
CACAGGGAAGAAGTCTCCAAAAAAGAGTCCTGGTCCCAAAACACCTCAGGGCAAGAAAAGAAAGGCTCTGCCAGTTCCTG
AGATCCCAGATGCAGGTCCAGGGAAGAAGCCAAAAATGGGACAGGAGAAGCAAAGAAAATCCTCACCAGGAAAGAAAGAT
CTGAGACAGACTCCAAAAAAGCCAGAGGCCAAGCTCTTCACCACTGCTAATAAATCTACAAGGAAAGCTCCCCAAACCCC
TAAACAATTACCAAAAGAATCCAAAGTGCCCCAGTCA
CAGATTAGAAAGGCAGTGGAAGCTTTGTTGACACAGTCGAAATCCAGGAAGAACAAAAATGGATTGCTTTTAAATGAAAA
TGAAAGTTTATTTTTAATGGTGGTGCTGTGGAAAATTCCAGGAAAAGAACTGAAGGTCAAATTGTTGTTGCCTCATCATA
TTCGATCAGACTTGTCAGAAATCTGTTTATTTACCAAGGATGAACTCCAGTCAGCTGAACAGACAGAACGCTTCTATAGA
AAGCTTTTGAACAAGCATGGAATTAAAACAATTTCTCGGATTATCCCTTTCCGAACTTTGAAAACAGAATATAAAGCTTA
TGAATCCAAGCTCCAACTCCTAAATAGTTTTGACTTCTTCCTTACTGATGAAAGAATTAGGCGACTTCTGCCCTCACACA
TAGGGAGACATTTCTATCAAAGGAAAAAAGTTCCAGTATCTGTAAACCTTCTGGCCAAGAATTTATCAGAAGAGATCAAC
AACTCCCTAGGTGGGACTGTCTTAAACATCTCCAAAAGTGGTTCTTGCAGTTCTGTACGCATTGGTCACACTGGAATGCG
GGCTCAAGACATCACTGAAAACATTGTTGCTGTGGCAGAAGGTCTTTCAAAAAAATTGCCAGAGAAGTGGGAAAGTGTGA
AACTCCTGTTCGTGAAAACTGGGAAGTCAGTTTCCCTCCCCATTTTTTCTTCGTTTGTCTCTTGTCAGAATGAAACCAAC
AAAATGTTAATTCGTAAGCTGAAGGAAAAAGAGGCTAAGAGAAAAGAGAAAGAACAAAAACTTCGTGAAAAACGGAAGTT
GAAGAAGGAAAAGAGAAAGTTAAAGGGAAAAGCTAAGAAGGTTACATCAGTCCTAACTAAAGGTGGCGTGGCACCTCAAA
CTAAAGGTGCTTCTGCAAAGAGCCGTAGGTCCCAGAAGAAAAAGACTGGGAAAGTAAAAACCCAAGTTAAAGTGACCAAT
GAATCTGATGATGAAATTCCACAACTGGTACCAATAGGCGAAACTCCAGTAAAAGAAAATGTTGAGGTACAGAAACATAT
CACAGGGAAGAAGTCTCCAAAAAAGAGTCCTGGTCCCAAAACACCTCAGGGCAAGAAAAGAAAGGCTCTGCCAGTTCCTG
AGATCCCAGATGCAGGTCCAGGGAAGAAGCCAAAAATGGGACAGGAGAAGCAAAGAAAATCCTCACCAGGAAAGAAAGAT
CTGAGACAGACTCCAAAAAAGCCAGAGGCCAAGCTCTTCACCACTGCTAATAAATCTACAAGGAAAGCTCCCCAAACCCC
TAAACAATTACCAAAAGAATCCAAAGTGCCCCAGTCA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 26 .29 RPM |
| SRP017611_kidney | 35 .70 RPM |
| SRP017611_brain | 31 .23 RPM |
| SRP040447_lung | 21 .66 RPM |
| SRP040447_skeletal_muscle | 19 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018865 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000010827 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008375 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000013664 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000784 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000029494 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015151 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000048608 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000016705 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_276 | 65.31 | 50.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_822 | 75.29 | 92.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_1262 | 68.32 | 71.75 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000010630 retrocopies