RetrogeneDB ID: | retro_shar_836 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867831.1:36431..36854(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL1D1 | ||
Ensembl ID: | ENSSHAG00000016705 | ||
Aliases: | None | ||
Description: | ribosomal L1 domain containing 1 [Source:HGNC Symbol;Acc:24534] |
Percent Identity: | 57.24 % |
Parental protein coverage: | 78.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HLVENIFAAVDVLSEKLPEKWESVKYLHLKTEKSLSLPVFSSCVSFLGSPQKSKEENQGNKIATNSLQVS |
HL.ENI.A.VDVLSEKLP.KWESV...HL.TEKSLSLP.FSS....LGSP.KSK....G....T...Q.. | |
Retrocopy | HLLENIVAVVDVLSEKLPKKWESVTIFHLNTEKSLSLPIFSSFLFHLGSP-KSKKQKNGKTVVTKPGQAV |
Parental | VRPERECGLDDHELEAEKESIAEPDNEDKVPQLVPVQAAFSQKHPELHKAALIKDSTEESINAETSQAKT |
V.P..E.GL..HELE.EK...AEPD..D..PQLVP..A..SQK.P.L.KA..IK.ST..S..AE..Q.K. | |
Retrocopy | VNP--ESGLEGHELETEKKGTAEPDSYDEIPQLVPI*AS-SQKCPKLDKASRIKGSTAQSLSAEITQVKS |
Parental | PDEKR |
P...R | |
Retrocopy | PVKNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018865 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010827 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008375 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010630 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000013664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000784 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000029494 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015151 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048608 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016705 | 1 retrocopy |
retro_shar_836 ,
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