RetrogeneDB ID: retro_mluc_168

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429984:2147973..2148432(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025324
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000024207
• Aliases: None
• Description: None

Sequence

>retro_mluc_168
ATGGAGGCCGTGCTAAACAGACTGGTGTCTGTGGACGACCTGCTGAAGTTTGAAAAGAAATTTCAGTCTGAGAAGGCAGC
AGACTCGATGTCCAAGAGCACGCAGTTTGAGTACGCCTGGTGCTTGGTGCGAAGCAAGTACAACGATGACATCCGTAAAG
GCATTGCCCTGCTGGAGGAGCTATTGCTCAAAGGGAGCAAAGAGGAGCAGCGGGATTATGTCTTCTACCTGGCTGTGGGG
AACTACCGAGTCAAGGAGTATGAAAAGGCCCTAAAGTATGTGCGAGGGCTGCTGCAGACAGAACCCCAGAACAACCAGGC
CAAAGAACTGGAACGGCTCATTGACAAGGCCATGAAGAAAGATGGACTGGTGGGCATGGCCATTGTTGGAGGCATGGCCC
TGGGTGTGGCGGGACTGGCTGGACTCATCGGACTTGTTGTATCCAAGTCCAAATTCTGA

Alignment

ORF - retro_mluc_168 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.69 %
• Parental protein coverage: 99.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEAVLNELVSVDDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIALLEELLLKGSKEEQ
          MEAVLN.LVSVDDLLKFEKKFQSEKAA.S.SKSTQFEYAWCLVRSKYNDDIRKGIALLEELLLKGSKEEQ
Retrocopy MEAVLNRLVSVDDLLKFEKKFQSEKAADSMSKSTQFEYAWCLVRSKYNDDIRKGIALLEELLLKGSKEEQ

Parental  RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLA
          RDYVFYLAVGNYR.KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLA
Retrocopy RDYVFYLAVGNYRVKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLA

Parental  GLIGLAVSKSK
          GLIGL.VSKSK
Retrocopy GLIGLVVSKSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_168 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013800	2 retrocopies	retro_cfam_557, retro_cfam_755,
Callithrix jacchus	ENSCJAG00000016053	1 retrocopy	retro_cjac_1913,
Loxodonta africana	ENSLAFG00000020494	1 retrocopy	retro_lafr_702,
Myotis lucifugus	ENSMLUG00000024207	1 retrocopy	retro_mluc_168 ,
Monodelphis domestica	ENSMODG00000005034	1 retrocopy	retro_mdom_1773,
Otolemur garnettii	ENSOGAG00000028158	1 retrocopy	retro_ogar_1544,
Rattus norvegicus	ENSRNOG00000001420	2 retrocopies	retro_rnor_1659, retro_rnor_1689,
Sus scrofa	ENSSSCG00000027757	1 retrocopy	retro_sscr_1083,