RetrogeneDB ID: | retro_mluc_1871 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429933:1766953..1767730(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000003387 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM30A | ||
Ensembl ID: | ENSMLUG00000011923 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.41 % |
Parental protein coverage: | 56.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CICTINFTLEQSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDPTALLNPSKECEPYRRN-EDKPIAP |
C.C..NF.L...F.G.V..YY.L.NFYQN.RRY..SRDD.QL.G...AL..P..EC.PY.......PIAP | |
Retrocopy | CRCAWNFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLQSALRHPVNECFPYQFSAKGVPIAP |
Parental | CGAIANSMFNGLDTLELFLVVNGSFSTAIPLKKKGIAWWTDKNVKFRNPP-GEGPLEERFKDTTKPVNWV |
CGAIANS.FN...TL.......G......PL...GIAWWTD..VKF.NPP...G.L...F..TT.P.NW. | |
Retrocopy | CGAIANSLFNDTFTLWHQRLPGGPY-VEVPLDRTGIAWWTDYHVKFHNPPLVNGSLALAFRGTTRPPNWP |
Parental | NPVYLLDSDQDNNGFINEDFIVWMRTAALPTFRKLYRIIERKSDLHPTLPAGDYFLNIKYNYPVHSFDGR |
.PVY.L..D..N.GFIN.DF.VWMRTAALP.FRKLY..I.R.......LP.G.Y..NI.YNYPV..F.G. | |
Retrocopy | VPVYQLSPDPNNTGFINQDFVVWMRTAALPWFRKLYARI-RQGNYSAGLPRGNYRVNITYNYPVRAFGGH |
Parental | KRMILSTISWMGGKNPFLGIAYITTGSISFLLGVVLLVINHKYRNSSNTAD |
KR.ILS.ISWMGGKNPFLGIAY...GS...L.G.V.LV....Y......A. | |
Retrocopy | KRIILSNISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQNDEAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005100 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002708 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010325 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000020712 | 1 retrocopy | |
Homo sapiens | ENSG00000112697 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011923 | 1 retrocopy |
retro_mluc_1871 ,
|
Monodelphis domestica | ENSMODG00000018502 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032328 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004962 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015718 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016782 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000007174 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010895 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002543 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008211 | 1 retrocopy |