RetrogeneDB ID: | retro_itri_50 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:5391321..5392380(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000000288 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM30A | ||
Ensembl ID: | ENSSTOG00000002543 | ||
Aliases: | None | ||
Description: | transmembrane protein 30A [Source:HGNC Symbol;Acc:16667] |
Percent Identity: | 54.2 % |
Parental protein coverage: | 74.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CICTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDRSALLNPSKECEPYRRNEDK-PIAP |
C.C...F.L...F.G.V..YY.L.NFYQN.RRY..SRDD.QL.G..SAL.NP..EC.PY.......PIAP | |
Retrocopy | CSCAWYFSLPELFPGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALHNPVNECAPYQFSATGLPIAP |
Parental | CGAIANSMFNDTLELFLVANESDPTLMLIPLKRRGIAWWTDKNVKFRNPPGTE-SLKERFKDTTHPVNWL |
CGAIANS.FND...L........P.....PL.R..IAWWTD..VKF.NPP....SL...F..T..P.NW. | |
Retrocopy | CGAIANSLFNDSFSLWHQRRPGGPYVE-VPLDRAAIAWWTDYHVKFHNPPLVNGSLALAFRGTAPPPNWH |
Parental | KPVYELDPEDEDNNGFINEDFIVWMRTAALPTFRKLYRLIERKNDLHPTLPAGRYYLNITYNYPVHSFDG |
.PVYEL.P.D..N.GFIN.DF.VWMRTAALPTFRKL...I.R.......LP.G.Y..NITYNYPV..F.G | |
Retrocopy | RPVYELSP-DPNNTGFINQDFVVWMRTAALPTFRKLFARI-RQGNYTAGLPRGAYRVNITYNYPVRVFGG |
Parental | RKRMILSTVSWMGGKNPFLGIAYITIGSISFLLGVVLLVINHKYRNSSNTAD |
.K..I.S..SWMGGKNPFLGIAY...GS...L.G.V.LV....Y.......D | |
Retrocopy | HKLIIFSNISWMGGKNPFLGIAYLVVGSLCILMGFVMLVVYIRYQDQNEEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005100 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002708 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010325 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000020712 | 1 retrocopy | |
Homo sapiens | ENSG00000112697 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011923 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018502 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032328 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004962 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015718 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016782 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000007174 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010895 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002543 | 1 retrocopy |
retro_itri_50 ,
|
Tarsius syrichta | ENSTSYG00000008211 | 1 retrocopy |