Parental gene:

TMEM30A, ENSBTAG00000005100

Aliases:None
Description:cell cycle control protein 50A [Source:RefSeq peptide;Acc:NP_001068691]
Organism:Cow (Bos taurus)
Coordinates:9:15058057..15102252(-)


>ENSBTAG00000005100
ATGGCGATGAACTATAACGCGAAGGATGAAGTGGACGGCGGGCCCCCGTGTCCTCCCGGGGGCACCGCTAAGACCCGGAG
ACCAGATAACACGGCCTTCAAACAGCAACGGCTGCCGGCTTGGCAGCCCATCCTGACGGCTGGCACGGTGCTGCCCACCT
TCTTCATCATCGGCCTCATCTTCATCCCCATTGGCATCGGCATCTTCGTCACCTCCAACAACATCCGCGAGATCGAGATT
GATTATACCGGAACAGATCCTTCCAGTCCCTGTAATAAATGTTTGTCTCCGAATGTTACACCTTGTGTTTGTACCATTAA
CTTCACACTGGAACAGTCATTTGAGGGCAATGTATTTATGTATTATGGACTGTCTAATTTCTATCAAAACCATCGTCGCT
ATGTGAAATCGCGAGATGATGGTCAGCTAAATGGAGATCCTAGTGCTTTGCTTAATCCCAGTAAGGAGTGTGAGCCTTAT
CGAAGAAATGAAGACAAACCAATTGCTCCTTGTGGGGCTATAGCCAACAGCATGTTTAATGATACACTAGAATTGTTTCA
GGTTGGCAATGCATCTGATCTTACGCCTATTCCTTTGAAAAAGAAAGGTATTGCTTGGTGGACAGATAAAAATGTAAAAT
TCAGAAATCCCCCTGGAACAGATCCCTTAGAAGAACGATTCAAAGGCACAACAAAGCCAGTAAACTGGGTTAAACCAGTT
TACATGTTGGATTCTGACGAAGATAATAATGGCTTCATAAATGAGGATTTTATTGTTTGGATGCGTACTGCAGCATTACC
TACTTTTCGTAAGTTATATCGTCTTATAGAGCGGAAAAATGATTTACATCCAACATTACCAGCTGGACGATACTATTTGA
ATATCACATACAATTACCCTGTACATTCATTTGATGGACGGAAGCGGATGATCTTGAGCACCATTTCATGGATGGGAGGA
AAAAATCCATTTTTGGGGATTGCTTACATCACTATTGGATCCATCTCCTTTCTTCTGGGAGTTGTACTGCTAGTAATTAA
TCATAAATATAGAAACAGTAGTAATACTGCTGACATTACCATTTAA

Library Parental gene expression (RPM)
ERP005899_liver 15 .93 RPM
ERP005899_muscle 39 .28 RPM
SRP017611_brain 89 .44 RPM
SRP017611_kidney 76 .52 RPM
SRP017611_liver 24 .39 RPM
SRP030211_testis 127 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002708 ortholog_one2one 1 retrogene
retro_cfam_26,
Callithrix jacchus ENSCJAG00000010325 ortholog_one2one 1 retrogene
retro_cjac_801,
Cavia porcellus ENSCPOG00000020712 ortholog_one2many 1 retrogene
retro_cpor_23,
Homo sapiens ENSG00000112697 ortholog_one2one 1 retrogene
retro_hsap_12,
Myotis lucifugus ENSMLUG00000011923 ortholog_one2one 1 retrogene
retro_mluc_1871,
Monodelphis domestica ENSMODG00000018502 ortholog_one2one 1 retrogene
retro_mdom_287,
Mus musculus ENSMUSG00000032328 ortholog_one2one 1 retrogene
retro_mmus_108,
Nomascus leucogenys ENSNLEG00000004962 ortholog_one2one 1 retrogene
retro_nleu_69,
Otolemur garnettii ENSOGAG00000015718 ortholog_one2one 1 retrogene
retro_ogar_22,
Pongo abelii ENSPPYG00000016782 ortholog_one2one 1 retrogene
retro_pabe_204,
Pelodiscus sinensis ENSPSIG00000007174 ortholog_one2one 1 retrogene
retro_psin_61,
Rattus norvegicus ENSRNOG00000010895 ortholog_one2one 1 retrogene
retro_rnor_399,
Ictidomys tridecemlineatus ENSSTOG00000002543 ortholog_one2one 1 retrogene
retro_itri_50,
Tarsius syrichta ENSTSYG00000008211 ortholog_one2one 1 retrogene
retro_tsyr_928,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_72 54.65 70.64
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Download FASTA sequences of all ENSBTAG00000005100 retrocopies