Parental gene:

ENSCPOG00000020712

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:52885344..52912207(+)


>ENSCPOG00000020712
GCCGCGCCCTGGGGTCCGATGGCGATGAACTGCAACCCCAAGGACGAGGTGGACGGCGGGCCTCCGTGCGCCCCTGGGGG
CGCCGCGAAGACGCGGAGGCCGGACAACACGGCCTTCAAGCAGCAGCGGCTGCCCGCCTGGCAGCCCATCCTCACGGCGG
GCACCGTGCTGCCGACGTTCTTCATCGTCGGCCTCATCTTCATCCCCATCGGCATCGGCATCTTCGTCACCTCTAACAAC
ATCCGTGAGATCGAGATTGATTACACTGGAACAGAGCCTTCCAGTCCCTGCAATAAGTGCTTGTCCTCGAATGTGACACC
TTGCGTTTGCACCATTAACTTCACTCTGGAAAAGGCATTTGAGGGTAATGTGTTCATGTATTATGGCTTGTCTAATTTCT
ATCAAAATCATCGACGTTACGTGAAATCTCGAGATGATAGTCAGCTAAATGGAGATCCTAGAGCTTTAGTTAACCCCAGT
AAGGAATGTGAACCTTATCGAAGAAATGAAGACTTACCAATTGCTCCTTGTGGAGCTATTGCCAACAGCATGTTTAATGA
TACATTGGAATTGTTTCTGATCACCAATGACTCTGATCCTACACCCAAACCTATTCTTTTGCAAAGGAAAGGTATTGCTT
GGTGGACAGATAAACATGTGAAATTCAGAAATCCTCCTGGAGAAGGAACCCTGGAAGAACGATTTAAAGGCACAACAAAG
CCAGTAAACTGGCCTAAACCAGTGTACATGCTGGATTCGGAGGATGATAACAACGGCTTCATAAATGAGGATTTGATTGT
TTGGATGCGCACTGCAGCATTGCCTACTTTTCGAAAGTTGTATCGTCTGATAGAACGGACAGATGATTTGCATCCAACAT
TACCAGCTGGGCAGTACTATTTGAATATCACGTACAATTACCCTGTACATTCTTTTGATGGACGAAAACGGATGATCTTG
AGCACTATTTCATGGATGGGAGGAAAAAATCCATTTTTGGGGATTGCTTACATCACCGTTGGATCAATCTCTTTCCTTCT
GGGAGTCGTTCTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAACACTGCTGACACCATGGCA

Library Parental gene expression (RPM)
SRP017611_liver 42 .74 RPM
SRP017611_kidney 53 .50 RPM
SRP017611_brain 74 .83 RPM
SRP040447_lung 81 .59 RPM
SRP040447_skeletal_muscle 43 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005100 ortholog_one2many 1 retrogene
retro_btau_72,
Canis familiaris ENSCAFG00000002708 ortholog_one2many 1 retrogene
retro_cfam_26,
Callithrix jacchus ENSCJAG00000010325 ortholog_one2many 1 retrogene
retro_cjac_801,
Homo sapiens ENSG00000112697 ortholog_one2many 1 retrogene
retro_hsap_12,
Myotis lucifugus ENSMLUG00000011923 ortholog_one2many 1 retrogene
retro_mluc_1871,
Monodelphis domestica ENSMODG00000018502 ortholog_one2many 1 retrogene
retro_mdom_287,
Mus musculus ENSMUSG00000032328 ortholog_one2many 1 retrogene
retro_mmus_108,
Nomascus leucogenys ENSNLEG00000004962 ortholog_one2many 1 retrogene
retro_nleu_69,
Otolemur garnettii ENSOGAG00000015718 ortholog_one2many 1 retrogene
retro_ogar_22,
Pongo abelii ENSPPYG00000016782 ortholog_one2many 1 retrogene
retro_pabe_204,
Pelodiscus sinensis ENSPSIG00000007174 ortholog_one2many 1 retrogene
retro_psin_61,
Rattus norvegicus ENSRNOG00000010895 ortholog_one2many 1 retrogene
retro_rnor_399,
Ictidomys tridecemlineatus ENSSTOG00000002543 ortholog_one2many 1 retrogene
retro_itri_50,
Tarsius syrichta ENSTSYG00000008211 ortholog_one2many 1 retrogene
retro_tsyr_928,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_23 80.66 98.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000020712 retrocopies