RetrogeneDB ID: retro_mluc_1962

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429963:300754..301163(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GSTP1
• Ensembl ID: ENSMLUG00000011529
• Aliases: None
• Description: None

Sequence

>retro_mluc_1962
TTCCCTGGTTAAGGGCGCTATAAGGCCATGACATGCTGCGGGCTCACCAGGGCCAGAACTGGAAGGAGGAGGTGATGACC
AAGGAGATCTGGCTGCAGGGCTCACTCAAGACCTCCTGTCTGTATGGGCTCCCCAAGTTCCAGGATGGAGACCTCACCCT
GGACCAGTCCAATGCCATCCTGTGACCACGGAATCGCTCCCTTGGGCTGTACTGGAAGGACCAGTGGAAGGCAGCCCTGG
TAGACCTGGCGAATGATGGTGTAGAGGACCTCCACTGTAAATACATCACCCTCATTTATACCAACTACAAAGAGAACTAA
GTGAAGGAAATGCCAGGGCACCTGAAGCCTTTTGAGATCCTGTCGTCCCAGAACCAGGGGGCCAGGCTTTCATGGTGGGC
AGCCAGGTC

Alignment

ORF - retro_mluc_1962 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.63 %
• Parental protein coverage: 67.14 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FPVRGRCEATR-MLLADQGQSWKEEVVTKDTWMQGTLKASCLYGQLPKFQDGDLTLYQSNAILRHLGRSL
          FP..GR..A...ML.A.QGQ.WKEEV.TK..W.QG.LK.SCLYG.LPKFQDGDLTL.QSNAIL....RSL
Retrocopy FPG*GRYKAMT<MLRAHQGQNWKEEVMTKEIWLQGSLKTSCLYG-LPKFQDGDLTLDQSNAIL*PRNRSL

Parental  GLYGKDQREAALVDVVNDGVEDLRCKYATLIYTNYEAGKEDYVKELPGRLKPFETLLSQNQ-GGQAFIVG
          GLY.KDQ..AALVD..NDGVEDL.CKY.TLIYTNY...KE..VKE.PG.LKPFE.L.SQNQ.GGQAF.VG
Retrocopy GLYWKDQWKAALVDLANDGVEDLHCKYITLIYTNY---KEN*VKEMPGHLKPFEILSSQNQ<GGQAFMVG

Parental  NQI
          .Q.
Retrocopy SQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1962 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001020	3 retrocopies	retro_amel_1921, retro_amel_249, retro_amel_778,
Canis familiaris	ENSCAFG00000011349	4 retrocopies	retro_cfam_143, retro_cfam_2043, retro_cfam_46, retro_cfam_617,
Macropus eugenii	ENSMEUG00000001519	2 retrocopies	retro_meug_1519, retro_meug_1762,
Myotis lucifugus	ENSMLUG00000011529	4 retrocopies	retro_mluc_1669, retro_mluc_1714, retro_mluc_1962 , retro_mluc_629,
Mustela putorius furo	ENSMPUG00000004029	2 retrocopies	retro_mputfur_1215, retro_mputfur_1463,
Mus musculus	ENSMUSG00000038155	1 retrocopy	retro_mmus_521,
Rattus norvegicus	ENSRNOG00000018237	4 retrocopies	retro_rnor_2140, retro_rnor_2567, retro_rnor_2842, retro_rnor_769,