RetrogeneDB ID: retro_mluc_2369

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430260:526843..527289(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TTC35
• Ensembl ID: ENSMLUG00000013258
• Aliases: None
• Description: None

Sequence

>retro_mluc_2369
GAGTGTCTAGAACAATTTGTTGGAGACCAAGAAGCCTGGCCTGGATGTGCAGGGCTTCATATCAATGAACAGGACCACGG
TAAAGCAGCCTTTTCCTCGGAGGGGCTTATGCTGACTAATCCACACAACCACGTACACTGTCAACAGTACGCTGAGATGA
AACACACGCGAGGAGGACTTGAATACCTTGAACTTTCAAGAAAGTATTTTGCACAGGCATTGACACTGAGCAGCAGCAAT
ATGAGAGCTTTGTTCGGACTTTACATATGAGCAAGTCATATTGCTTCTAACCCAAAAGCAAGTGAAAACGCAGAAAAGAA
CAATATGCTAGTTGGGCAGCTCATCAGATAAACAGAGCTGATCAGTTGGCAGGTCGAAGGAAGAAGGAAACCACATGCTC
TCTAAAGGCAGTTGAAGGCATGTTGGAAACACGGCAGATTGCCCAG

Alignment

ORF - retro_mluc_2369 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.05 %
• Parental protein coverage: 50.84 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYF
          E.LEQFVGDQEAW...A.L.INE.D..KAAF..E.LM.TNPHNH..CQQYAE.K.T.GGLE.LELSRKYF
Retrocopy ECLEQFVGDQEAWPGCAGLHINEQDHGKAAFSSEGLMLTNPHNHVHCQQYAEMKHTRGGLEYLELSRKYF

Parental  AQALKLNNRNMRALFGLYMSASHIASNP-KASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKA
          AQAL.L...NMRALFGLY..ASHIASNP.K...K..K....YASWAA.QINRA.Q.AGR.KKET..SLKA
Retrocopy AQALTLSSSNMRALFGLYI*ASHIASNP<KSK*KRRKE--QYASWAAHQINRADQLAGRRKKETTCSLKA

Parental  VEDMLETLQITQ
          VE.MLET.QI.Q
Retrocopy VEGMLETRQIAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2369 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012826	1 retrocopy	retro_amel_600,
Canis familiaris	ENSCAFG00000000713	1 retrocopy	retro_cfam_726,
Choloepus hoffmanni	ENSCHOG00000011271	3 retrocopies	retro_chof_1512, retro_chof_1990, retro_chof_851,
Callithrix jacchus	ENSCJAG00000006437	2 retrocopies	retro_cjac_3295, retro_cjac_3867,
Myotis lucifugus	ENSMLUG00000013258	2 retrocopies	retro_mluc_2369 , retro_mluc_2452,
Mustela putorius furo	ENSMPUG00000005915	1 retrocopy	retro_mputfur_1647,
Mus musculus	ENSMUSG00000022337	1 retrocopy	retro_mmus_1262,
Oryctolagus cuniculus	ENSOCUG00000002461	1 retrocopy	retro_ocun_1251,
Pongo abelii	ENSPPYG00000018820	1 retrocopy	retro_pabe_1600,