RetrogeneDB ID: | retro_mluc_2452 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430437:155447..156172(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TTC35 | ||
Ensembl ID: | ENSMLUG00000013258 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.93 % |
Parental protein coverage: | 82.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | RKWRDENSRNSE-QIVEVGEELINEYASKLGDDIWI-IYEQVMI-AALDYGRDDLALFCL-QELRRQFPG |
R..R.ENS.N....I..V..E.IN..A.KLG..IWI..YEQV...AALDYG.D.........EL.RQF.G | |
Retrocopy | RN*RKENS*NCQ<EIMRVKQEFINGHATKLGAGIWI<LYEQVIV<AALDYGQDXXXXXXXXKELGRQFSG |
Parental | SHRVKR-LTGMRFEAMERYDDAIQLYDRILHEDPTNTAARKRKIAIRKAQ-GK-NVEAIRELNEYLEQFV |
SH..K..LTGMRF.AMERYDDA.QLYD.ILHE.PTNTA..K.KIA..KAQ.GK..VEAIRE.NE.LEQFV | |
Retrocopy | SHSIKH<LTGMRFAAMERYDDAVQLYDLILHEGPTNTAPGKHKIATLKAQ<GK<SVEAIREVNECLEQFV |
Parental | GDQEAWHELAELYINEHDYAKAAFCLEELMMTNPH-NHLYCQQYAEVKYTQGGLENLELSRKYFAQALKL |
GDQE.W.E...L.INEHD.AKAAF.LE.LM.TNP..NH..CQQYAEVK.TQGG...LEL.RK.FAQAL.L | |
Retrocopy | GDQETWPECVWLLINEHDHAKAAFSLEGLMLTNPQ<NHVHCQQYAEVKHTQGG---LELLRKCFAQALTL |
Parental | NNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQIN |
N.RNMRALFGLY..ASHIASNPK.S.....D.MKYASWAASQIN | |
Retrocopy | NSRNMRALFGLYI*ASHIASNPKPSXXXXXDTMKYASWAASQIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012826 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000713 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011271 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000006437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013258 | 2 retrocopies |
retro_mluc_2369, retro_mluc_2452 ,
|
Mustela putorius furo | ENSMPUG00000005915 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022337 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002461 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018820 | 1 retrocopy |