RetrogeneDB ID: | retro_mputfur_1647 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897741.1:14195..14891(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EMC2 | ||
Ensembl ID: | ENSMPUG00000005915 | ||
Aliases: | None | ||
Description: | ER membrane protein complex subunit 2 [Source:HGNC Symbol;Acc:28963] |
Percent Identity: | 82.63 % |
Parental protein coverage: | 78.45 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | DVTWEEMRDKMRKWREENSRNSEQIVEVG-EELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQ |
DVTWEEM.DKMRKWREE.S.NSEQIVEV..EELINEY.SKLGDDI..IYEQVMIAALDY..DDLALFCLQ | |
Retrocopy | DVTWEEM*DKMRKWREEDS*NSEQIVEV*<EELINEYGSKLGDDIRVIYEQVMIAALDYS*DDLALFCLQ |
Parental | ELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRK-IAIRKAQG-KNVEAIRELN |
ELRRQFPGSH.VKRLTG.RFEAMERYDDAIQ....ILQEDPTNTAAR........K..G.K.VEAI.ELN | |
Retrocopy | ELRRQFPGSHGVKRLTGIRFEAMERYDDAIQPHGKILQEDPTNTAARTPD<LSFEKPRG<KTVEAIWELN |
Parental | EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYF |
EYL.Q..G.QEAW.ELAELYINEHDYAKA.FCLEELMM.NPHNHL.CQQYAEVKYTQGGLENLELSRKYF | |
Retrocopy | EYL*QISGGQEAWLELAELYINEHDYAKATFCLEELMMANPHNHLHCQQYAEVKYTQGGLENLELSRKYF |
Parental | AQALKLNNRNMRALFGLYMSASHIAS |
A.ALKL.NRNMRAL.GL.MSASHIAS | |
Retrocopy | AEALKLSNRNMRALCGLFMSASHIAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012826 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000713 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011271 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000006437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013258 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005915 | 1 retrocopy |
retro_mputfur_1647 ,
|
Mus musculus | ENSMUSG00000022337 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002461 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018820 | 1 retrocopy |