RetrogeneDB ID: | retro_mluc_2399 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430313:40425..41113(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000030545 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000025440 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.91 % |
Parental protein coverage: | 71.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KRRVFREPYIAEIPTTVDWRKEGYVTPVKNQGHCGSCWAFSATGALEGQMFRK-TGKLISLSEQNLVD-C |
...VFREPY.AEIP...DWRKEGYVTPVKNQGHCGS.WAFSATGALEGQ.FRK.TGKLISLSEQNLVD.C | |
Retrocopy | RKGVFREPYLAEIPPATDWRKEGYVTPVKNQGHCGSRWAFSATGALEGQVFRK<TGKLISLSEQNLVD<C |
Parental | SQAQGNEGCNGGLMDNAFQYVKSNGGLDSEDSYPYQATVGPCRYRPEDSVANVTGFVDVPGQESALMRAV |
SQAQGNEGC.GG.M.NAFQ..KS.G.LDSE..YP.QA..GPCRYRPEDSVAN.TGFVD.PGQE.AL..AV | |
Retrocopy | SQAQGNEGCSGGRMENAFQDGKSKGSLDSEEFYPHQAKGGPCRYRPEDSVANDTGFVDIPGQEGALVKAV |
Parental | ATVGPISVAIDASHFSFQFYEDGIYYERRCSSVDLDHGVLVVGYGFEGEDSSNNKYWIVKNSWGGTWGKN |
ATVGPISVAIDAS..SF.F.E.GIYYE.R.SSVDL.....VVGYGFEGEDSS.NKYWIVKNSWG.TW.KN | |
Retrocopy | ATVGPISVAIDASRLSFRFCEGGIYYEQRWSSVDL-F*IMVVGYGFEGEDSS-NKYWIVKNSWGETWSKN |
Parental | GYIKMAKDRNNHCGIATAASYPTV |
GY.KMAKDRNNHCGI..AAS.PTV | |
Retrocopy | GYMKMAKDRNNHCGITAAASCPTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy |
retro_mluc_2399 ,
|
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies |