RetrogeneDB ID: | retro_tsyr_603 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_148139:966..1661(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000002858 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.1 % |
Parental protein coverage: | 69.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RKGKAFQAPPLSDFPPSMDWRKKGFVTPVKFQGPCGSCWAFSATGALEGQMVWKTGQLVALSEQNLVDCS |
RKGKAF..P.....P.S.DWR.KG.VTPVK.QG.CGSCWAFSATG....QM..KTG.L..LSEQNLVDCS | |
Retrocopy | RKGKAFLEPLFLEAPRSVDWREKGYVTPVKNQGECGSCWAFSATGT-SFQMFRKTGKLISLSEQNLVDCS |
Parental | GPQGNLGCDGGWMESAFQYVL-ENGGLDAEEFYPYMAADEDCKYKPEYSAANDTGFIDIPEGENSLLSAV |
..QGN.GC.GG....AFQY...EN.GLD.E..YPY...DE.CKYKPEYS.ANDTGF.DIP.GE..L..AV | |
Retrocopy | QAQGNEGCNGGLKGNAFQYIK<ENRGLDSEASYPYTGKDETCKYKPEYSGANDTGFVDIPVGEKALMRAV |
Parental | ATVGPISVAIDASQDSFQFYGEGIYYEPNCSKEKTNHAVLVVGYGHEGVKPDENKYWLVKNSWSTYWGLN |
A..GPISVA.DA...SFQFY.EGIY..P.CS.E...H.VLVVGY..EG...D..KYW.VKNS..T.W... | |
Retrocopy | AFWGPISVAVDAGHESFQFYKEGIYFVPDCSSEDLDHGVLVVGYNYEGTDSDNSKYWIVKNS*GTGWVMD |
Parental | GYIKMARDRNNNCGIASYASYPTV |
GYIKMAR...NN.GIA..ASYP.V | |
Retrocopy | GYIKMAREPENNSGIAPAASYPVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies |
retro_tsyr_150, retro_tsyr_603 ,
|