RetrogeneDB ID: | retro_tsyr_150 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_3910:132210..132808(-) | ||
Located in intron of: | ENSTSYG00000007396 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000002858 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.42 % |
Parental protein coverage: | 60.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SLVLAVFCLGIASAAPTLGHSLAARWNQWKAEHEKLYEMNEEGWPRTMWKKNMKMIEEHSEEYKEGKRGF |
SL.L..FC.GIASAAPTL..S..A.WNQWKA...KLY.MNEEGW.R..W.KNMK.I..H..EY.EGK.GF | |
Retrocopy | SLFLVAFCFGIASAAPTLDDS*VAQWNQWKAKYRKLYAMNEEGWQRAVWEKNMKLIIQHNQEYREGKHGF |
Parental | TVAMNALGDIXXXXXXXXXXXXXXXXXRKGKAFQAPPLSDFPPSMDWRKKGFVTPVKFQGPCGSCWA-FS |
..AMN...D...................KGK.FQ.PP.S...PSMDWRK.G.VTPVK.Q....S.WA.F. | |
Retrocopy | PLAMNTFEDMTSKEYNQRMNDFQYQKHKKGKVFQEPPFSYVHPSMDWRKEGYVTPVKDQYERDSGWA<FC |
Parental | ATGALEGQMVWK-TGQLVALSEQNLVDCSGPQGNLGCDGGWMESAFQYVLENGGLDAEEFYP |
ATGALEGQ...K.TG.LV.LSEQNLVDCS..QGN.GC.GG.M..AFQ.V..NGGLD....YP | |
Retrocopy | ATGALEGQTSEK<TGKLVVLSEQNLVDCSQTQGNAGCKGGRMDYAFQFVKKNGGLDSATSYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies |
retro_tsyr_150 , retro_tsyr_603,
|