RetrogeneDB ID: | retro_mluc_2549 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430893:60889..61504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YIPF5 | ||
Ensembl ID: | ENSMLUG00000011143 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.56 % |
Parental protein coverage: | 80.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSGFDNLNTDFYQTSYSIDDQSQQ-SYDYGGSGGPYNKQYAGYDYSQQGRYVPPEMIQPQQPYTGQI-FQ |
MSGFDNLNTDFYQTSYSI.D...Q.S.DYGG.GGP..KQ.AG.DYSQQGRYVPP...QPQQPY..QI..Q | |
Retrocopy | MSGFDNLNTDFYQTSYSI-DDWSQ>SPDYGGRGGPCSKQCAGCDYSQQGRYVPPDVLQPQQPYARQI<SQ |
Parental | PTQTFTPTTPQPFYGNSFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFG |
P.QT.TPT.PQPF.GNSFEDEP.LLEELGINFDHIWQK..TVLHPLKVADGSIMNE..LAG.MVFC.AFG | |
Retrocopy | PAQTYTPTAPQPFHGNSFEDEPLLLEELGINFDHIWQKIRTVLHPLKVADGSIMNEAHLAGTMVFCFAFG |
Parental | ATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMV |
..LLLAGKIQFGYVYGIS.I..L....LLNLMSM.G.SFGC..SVL.YCL.P.ILL.S..VIFSLQ.MV | |
Retrocopy | VILLLAGKIQFGYVYGISTIE-LSRNALLNLMSMIGISFGCEGSVLRYCLHPVILLFSVVVIFSLQ*MV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010135 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014497 | 1 retrocopy | |
Felis catus | ENSFCAG00000031350 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011143 | 3 retrocopies |
retro_mluc_2549 , retro_mluc_521, retro_mluc_750,
|
Otolemur garnettii | ENSOGAG00000001543 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008071 | 1 retrocopy |