RetrogeneDB ID: | retro_mluc_521 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429767:45944882..45945577(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YIPF5 | ||
Ensembl ID: | ENSMLUG00000011143 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.12 % |
Parental protein coverage: | 90.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | YSIDDQSQQSYDYGGSGGP-YNKQYAGYDYS-QQGRY-VPPEMIQPQQPYTGQI-FQPTQTFTPTTPQPF |
YSI.DQ.QQ.YDYGG..GP....Q...YDY..QQ.R..VPP.M.QPQQP.T..I...PTQTFTPTT..P. | |
Retrocopy | YSINDQ*QQCYDYGGRRGP<FSTQ*SDYDYC<QQARL<VPPVMMQPQQPHTRRI<YPPTQTFTPTTHRPI |
Parental | YGNSFEDEPPLLEEL--GINFDHIWQKTLTVLHP-LKVADGSIMNETDLAGPMVFC-LAFGATLLLAGKI |
YGN.FEDEP.LL.EL..G..F.HIWQKTL.V.H..LK.A.GS..NET.L.GP..F..LAFGAT.LLAGK. | |
Retrocopy | YGNNFEDEPSLLKELELGMDFHHIWQKTLKVSHY<LKMAAGSTTNETALVGPTDFS<LAFGATWLLAGKT |
Parental | QFGYVYGISAIGCLGMFCLLNLMSMTGVSFG-CVASVLGYCLLPMILLSSFAVIFSLQGMVGVILTAGII |
QFG.VYG..AIG.LGMF.LLNLMSMTGVSFG.CVASVLGY...PMIL.SSFAVIFSLQ.MV..ILT.GI. | |
Retrocopy | QFGFVYGVRAIGRLGMFSLLNLMSMTGVSFG<CVASVLGYYFPPMILFSSFAVIFSLQ*MVRTILTPGIV |
Parental | GWCSFSASKIFISALAMEGQQLLVAYPCALL |
GWC.F.ASKIFISALA.EGQQLLVAYPC..L | |
Retrocopy | GWCHFPASKIFISALATEGQQLLVAYPCFVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010135 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014497 | 1 retrocopy | |
Felis catus | ENSFCAG00000031350 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011143 | 3 retrocopies |
retro_mluc_2549, retro_mluc_521 , retro_mluc_750,
|
Otolemur garnettii | ENSOGAG00000001543 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008071 | 1 retrocopy |