RetrogeneDB ID: | retro_ogar_2803 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873665.1:362299..362897(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YIPF5 | ||
Ensembl ID: | ENSOGAG00000001543 | ||
Aliases: | None | ||
Description: | Yip1 domain family, member 5 [Source:HGNC Symbol;Acc:24877] |
Percent Identity: | 84.65 % |
Parental protein coverage: | 76.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYASYDYSQQGRFVPPDMMQPQQPYTGQIFQPT |
M.GFENLNTDFYQTS.SI.DQSQQSYDYGG.GGPYSK.YASYDYSQQG.FVPPDM.QPQQPYTGQIFQPT | |
Retrocopy | MPGFENLNTDFYQTSDSINDQSQQSYDYGGRGGPYSK*YASYDYSQQGQFVPPDMRQPQQPYTGQIFQPT |
Parental | QTYTP-SPQPYYGNNFEDEPPLLEELGINFDHIWQKTLTV-LHPLKVADGSIMNETDLAGPMVFCLAFGA |
Q.Y.P.SPQP.YG...EDEPPLLEELGINFDH.WQKT.TV.LHPLKVADG.IMN.TDLAGPMV..LAFGA | |
Retrocopy | QAYIPTSPQPFYGIKLEDEPPLLEELGINFDHMWQKT*TV<LHPLKVADGIIMNKTDLAGPMVLGLAFGA |
Parental | TLLLAGKIQFGYVYGISAIGC-LGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVI |
TLLLAGKIQFGY.YGISAIGC..G.FCLLN.MS.TGVSF.CVASVLGY.LLPMIL.S.FAVI | |
Retrocopy | TLLLAGKIQFGYAYGISAIGC<SGIFCLLNPMSTTGVSFVCVASVLGYYLLPMILPSGFAVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010135 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014497 | 1 retrocopy | |
Felis catus | ENSFCAG00000031350 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011143 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000001543 | 2 retrocopies |
retro_ogar_2657, retro_ogar_2803 ,
|
Tarsius syrichta | ENSTSYG00000008071 | 1 retrocopy |