RetrogeneDB ID: retro_mluc_750

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:10205077..10205502(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028872
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: YIPF5
• Ensembl ID: ENSMLUG00000011143
• Aliases: None
• Description: None

Sequence

>retro_mluc_750
ATGTCAGGCTTTGATAACTTAAACACGGATTTCTACCAGACAAGTTACAGCATCGATGACCGGTCACAGCAGTCCTGATT
ATGGAGGAAGGGGAGGCCCCTGTAGCAAACAGTGTCTGGCTGTGACTACTCGCAGCAAGGTCGGTATGTCCCTCCAGATG
TGATGCAGCCACAGCAGCCATACGCCAGGCAGATTCCCAGCCAGCTCAGACATATACTCCAACTGCTCCTCAGCCATTCC
ATGGAAACAGCTTTGAGGATGAACCACTTTTATTGGAAGAATTAGGTATCAATTTTGACCACATCTGGCATAAAACACTA
ACAGTGTTACACCCATTAAAAGTAGCAGATGGCAGCATCATGAATGAGGCTCACCTGGCAGGAACCATGGTGTTTTGCTT
TGCCTTTGGAGCCACATTGTTACTG

Alignment

ORF - retro_mluc_750 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.45 %
• Parental protein coverage: 55.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSGFDNLNTDFYQTSYSIDDQSQQ-SYDYGGSGGPYNKQ-YAGYDYSQQGRYVPPEMIQPQQPYTGQI-F
          MSGFDNLNTDFYQTSYSI.D...Q.S.DYGG.GGP..KQ...G.DYSQQGRYVPP...QPQQPY..QI..
Retrocopy MSGFDNLNTDFYQTSYSI-DDRSQ>SPDYGGRGGPCSKQ<VSGCDYSQQGRYVPPDVMQPQQPYARQI<S

Parental  QPTQTFTPTTPQPFYGNSFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAF
          QP.QT.TPT.PQPF.GNSFEDEP.LLEELGINFDHIW.KTLTVLHPLKVADGSIMNE..LAG.MVFC.AF
Retrocopy QPAQTYTPTAPQPFHGNSFEDEPLLLEELGINFDHIWHKTLTVLHPLKVADGSIMNEAHLAGTMVFCFAF

Parental  GATLLL
          GATLLL
Retrocopy GATLLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_750 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010135	1 retrocopy	retro_amel_489,
Dasypus novemcinctus	ENSDNOG00000014497	1 retrocopy	retro_dnov_16,
Felis catus	ENSFCAG00000031350	1 retrocopy	retro_fcat_177,
Myotis lucifugus	ENSMLUG00000011143	3 retrocopies	retro_mluc_2549, retro_mluc_521, retro_mluc_750 ,
Otolemur garnettii	ENSOGAG00000001543	2 retrocopies	retro_ogar_2657, retro_ogar_2803,
Tarsius syrichta	ENSTSYG00000008071	1 retrocopy	retro_tsyr_16,