RetrogeneDB ID: retro_mluc_2634

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL432436:2195..2844(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025036
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ALDOA
• Ensembl ID: ENSMLUG00000011210
• Aliases: None
• Description: Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:G1PHQ0]

Sequence

>retro_mluc_2634
CCAGAGTCCACTCGCCAGCCCGCTGCCCTCCACGGCTGCACACATAAACCCGCCTCTCTCCTGGGCCAGGAACTGACTGG
CCCCAGGCCCTACCAATACCCAGGGCTGACCCCAGAGCAAAAGGAAGAGGCATCTGACTTTGCTCACCGCATCGTGGCTC
TGAGCAAGGGCACCCTGGCTGCAGATGAGTCCACTGGGAGCACTGCCACACGGCTGCAGTCCATTGGCACTGAGAACCCC
AAGGAGACCAGCGCTTCTCCTGCCAGCTACTGGTGACGGCCGATGACTGCAAGAACCCCTGTATTGGGGTGTCACCCTCT
TCCATGAGATGCTCTATCAGAAGACAGATGATGGGCGTCCCTTCCCCCAAGTTATCAGATCCAAGGGTGGTGTTGTGGGC
ATCAAGGTGGGCAAGGGTATGGTACCCCTGGCAGAGACTACTACCAAAGGGCTGGATGGGCTGTCTGAGTGCTGTGCCCA
GTACAAGAAGGATGGATCTGACTTTGCCGAGTGGCGCTATGTGCTGAAGATTGGTGAACACACCCCCTCAACCCTCGCCG
TCATGGAAAACACCGACGTTCTGGCCAGTAACGCCAGAATCTGCCTGCAGAATGGCATTGTGCCCATCATGGAGCCTGCG
ATCCTCCCC

Alignment

ORF - retro_mluc_2634 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.67 %
• Parental protein coverage: 53.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PDASMQPHPLLGNTQQHRELGKVQEALTGTMTYQYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSI
          P....QP..L.G.T..H.........LTG...YQYP.LTPEQK.E.SD.AHRIVA..KG.LAADESTGS.
Retrocopy PESTRQPAALHGCT--HKPASLLGQELTGPRPYQYPGLTPEQKEEASDFAHRIVALSKGTLAADESTGST

Parental  AKRLQSIGTENTEE-NRRFYRQLLLTADDRVNPCIG-GVILFHETLYQKTDDGRPFPQVIKSKGGVVGIK
          A.RLQSIGTEN..E...RF..QLL.TADD..NPCIG.GV.LFHE.LYQKTDDGRPFPQVI.SKGGVVGIK
Retrocopy ATRLQSIGTENPKE<DQRFSCQLLVTADDCKNPCIG<GVTLFHEMLYQKTDDGRPFPQVIRSKGGVVGIK

Parental  VDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASIC
          V.KG.VPLA....ETTT.GLDGLSE.CAQYKKDG.DFA.WR.VLKIGEHTPS.LA.MEN..VLA..A.IC
Retrocopy VGKGMVPLA----ETTTKGLDGLSECCAQYKKDGSDFAEWRYVLKIGEHTPSTLAVMENTDVLASNARIC

Parental  QQNGIVPIVEPEILP
          .QNGIVPI.EP.ILP
Retrocopy LQNGIVPIMEPAILP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2634 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 30 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008221	2 retrocopies	retro_cfam_190, retro_cfam_631,
Callithrix jacchus	ENSCJAG00000006874	1 retrocopy	retro_cjac_1803,
Cavia porcellus	ENSCPOG00000007434	1 retrocopy	retro_cpor_951,
Echinops telfairi	ENSETEG00000019230	1 retrocopy	retro_etel_20,
Homo sapiens	ENSG00000149925	1 retrocopy	retro_hsap_740,
Gorilla gorilla	ENSGGOG00000013979	1 retrocopy	retro_ggor_621,
Myotis lucifugus	ENSMLUG00000011210	3 retrocopies	retro_mluc_1172, retro_mluc_2634 , retro_mluc_808,
Macaca mulatta	ENSMMUG00000000983	1 retrocopy	retro_mmul_2596,
Monodelphis domestica	ENSMODG00000015696	4 retrocopies	retro_mdom_1236, retro_mdom_1356, retro_mdom_528, retro_mdom_96,
Mus musculus	ENSMUSG00000030695	3 retrocopies	retro_mmus_2160, retro_mmus_42, retro_mmus_90,
Nomascus leucogenys	ENSNLEG00000002152	1 retrocopy	retro_nleu_133,
Oryctolagus cuniculus	ENSOCUG00000006329	1 retrocopy	retro_ocun_1550,
Ochotona princeps	ENSOPRG00000009760	1 retrocopy	retro_opri_914,
Pongo abelii	ENSPPYG00000007244	1 retrocopy	retro_pabe_636,
Pan troglodytes	ENSPTRG00000007983	1 retrocopy	retro_ptro_526,
Rattus norvegicus	ENSRNOG00000023647	7 retrocopies	retro_rnor_1343, retro_rnor_1541, retro_rnor_1796, retro_rnor_1807, retro_rnor_226, retro_rnor_2791, retro_rnor_536,