RetrogeneDB ID:

retro_mluc_342

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:AAPE02066543:6009..6957(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000003232
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000000648
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_342
ATGTCTAAGTCTGAGTCTCCCAAGGAGCCGGAGCAGCTGCGGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGA
TGAGAGTCTGAGGGGCCATTTTGAGCAATGGGGAGCGCTCACGGACTGTGTGGTGATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTTGTCACCTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAACTCGAGGCCACACAAGGTGGAC
GGAAGAGTGGTGGAACCAAAGAGGGCTGTCTCCAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTCGGTGGTATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATAGAAGTGA
TTGAAATCATGACTGACCGAGGCAGTGGCAAAAAGAGAGGCTTTGCTTTTATAACCTTTGGTGACCATGACTCTGTAGAC
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCTCTATCTAAGCAAGAGATGAC
TAGTGCTTCGTCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGAGGTGGTCGTGGAGGTGGTTTTGGTGGAAACG
ACAACTTTGGTCATGGAGGAAACTTCAGTGGTCGAGGTGGCTTTGGTGGCAGCCGTGGTGGCAGTGGGAATGGCTATAAT
GGATTTGGTAATGATGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAGTCAATCTTCAAA
TGTTGGGCCTATGAAAGGAGGAAACTTTGGAGGCAGAAGCTCTGGCCCTTATGGTGGTGGAGGTCAATACTTTGCCAAAC
CACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTTAA

ORF - retro_mluc_342 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.62 %
Parental protein coverage: 80.57 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA
....SPKEPEQLRKLFIGGLSFETTDESLR.HFEQWG.LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA
RetrocopySKSESPKEPEQLRKLFIGGLSFETTDESLRGHFEQWGALTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA
ParentalMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG
MN.RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG
RetrocopyMNSRPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG
ParentalSGKKRGFAFVTFDDHDSVDKIVNIVQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG
SGKKRGFAF.TF.DHDSVDKIV...QKYHTVNGHNCEVRKALSKQEM.SASSSQRGRSGSGNFGGGRGGG
RetrocopySGKKRGFAFITFGDHDSVDKIV--IQKYHTVNGHNCEVRKALSKQEMTSASSSQRGRSGSGNFGGGRGGG
ParentalFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG--FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQ
FGGNDNFG.GGNFSGRGGFGGSRGG.G.G..G.G..G..FG..G.Y...G...S..S......G...G..
RetrocopyFGGNDNFGHGGNFSGRGGFGGSRGGSGNGYNGFGNDGSNFGGGGSYNDFGNYNSQSSNVGPMKGGNFGGR
ParentalGSG-YGGSGSYDSYNNGGGGGGFGGGSGSNFGGG
.SG.YGG.G.Y.......GG.G.G..S.S..G.G
RetrocopySSGPYGGGGQYFAKPRNQGGYG-GSSSSSSYGSG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_342 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000092287 retrocopies
Myotis lucifugus ENSMLUG00000000648 3 retrocopies
retro_mluc_2503, retro_mluc_342 , retro_mluc_82,
Myotis lucifugus ENSMLUG000000033802 retrocopies
Myotis lucifugus ENSMLUG000000075781 retrocopy
Myotis lucifugus ENSMLUG000000144522 retrocopies
Mustela putorius furoENSMPUG000000046201 retrocopy
Mustela putorius furoENSMPUG000000057352 retrocopies
Oryctolagus cuniculus ENSOCUG000000133501 retrocopy
Oreochromis niloticus ENSONIG000000122481 retrocopy



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