RetrogeneDB ID: retro_mluc_82

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429973:867194..868208(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027353
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000648
• Aliases: None
• Description: None

Sequence

>retro_mluc_82
ATGTCTAAGTCTGAGTCTCCCAAGGAGCCGGAGCAGCTGCGGAAGCTCATTATCGGAGGTTTGAGCTTTGAAACAACCGA
TGAGAGTCTGAGGAGCCATTCTGAGCAATGGGGAACGCTCACGGACTGTGTGGTGATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTTGTCACCTATGCCACTGTGGAAAAGGTGGATGCAGCCATGAACGCAGGGCCACACAAGGTGGAC
AGAAGAGTGGTGGAACCCAAGAGGGCTGTCTCCAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAGAAAGAT
TTTTGTCGGTGGTATTAGAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATAGAAGTGA
TTGAAATCACGGCTGACCGAGGCAGTGGCAAAAAGAGAGGCTTTGCTTTTGTAACCTTTGATGACCATGACTCTGTAGAC
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCTCTATCTAAGCAAGAGATGGC
TAGTGCTTCGTCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTCGGAGGTGGTCGTGGAGGTGGTTTTGGTAGAAACG
ACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCAAGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGATGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAA
CCATCAATCTTCAAATGTTGGGCCTATGAAAGGAGGAAACTTTGGAGGCAGAAGCTCTGGCCCTTATGGTGGTGGAGGTC
AATACTTTGCCAAACCACAAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTTTGGCAGTGGCAGAAAGGTT
TTAACTACTGCCAGGAAACAAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGA

Alignment

ORF - retro_mluc_82 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.44 %
• Parental protein coverage: 82.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA
          ....SPKEPEQLRKL.IGGLSFETTDESLRSH.EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE.VDAA
Retrocopy SKSESPKEPEQLRKLIIGGLSFETTDESLRSHSEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA

Parental  MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG
          MNA.PHKVD.RVVEPKRAVSREDSQRPGAHLTV.KIFVGGI.EDTEEHHLRDYFEQYGKIEVIEI..DRG
Retrocopy MNAGPHKVDRRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIREDTEEHHLRDYFEQYGKIEVIEITADRG

Parental  SGKKRGFAFVTFDDHDSVDKIVNIVQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG
          SGKKRGFAFVTFDDHDSVDKIV...QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG
Retrocopy SGKKRGFAFVTFDDHDSVDKIV--IQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG

Parental  FGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS
          FG.NDNFGRGGNFSG.GGFGGSRGGGGYGGSGDGYNGFGNDG...GGG..Y.......G.......N.G.
Retrocopy FGRNDNFGRGGNFSGQGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYN----DFGNYNHQSSNVGP

Parental  GYGGS-GSYDSYNNGGGGGGFGGGSG-SNFGGGGSYNDFGN
          ..GG..G...S...GGGG..F.........GG..S...FG.
Retrocopy MKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGGSSSSSSFGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_82 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000009228	7 retrocopies	retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Myotis lucifugus	ENSMLUG00000000648	3 retrocopies	retro_mluc_2503, retro_mluc_342, retro_mluc_82 ,
Myotis lucifugus	ENSMLUG00000003380	2 retrocopies	retro_mluc_2024, retro_mluc_2138,
Myotis lucifugus	ENSMLUG00000007578	1 retrocopy	retro_mluc_34,
Myotis lucifugus	ENSMLUG00000014452	2 retrocopies	retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo	ENSMPUG00000004620	1 retrocopy	retro_mputfur_34,
Mustela putorius furo	ENSMPUG00000005735	2 retrocopies	retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus	ENSOCUG00000013350	1 retrocopy	retro_ocun_1675,
Oreochromis niloticus	ENSONIG00000012248	1 retrocopy	retro_onil_38,