RetrogeneDB ID: | retro_dnov_1670 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_261497:136..711(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSDNOG00000009228 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 84.46 % |
Parental protein coverage: | 51.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-TVEEVD |
.S.SES.KEPEQL.KLFI..LSFETT.E..RSHFEQWGTLTDCVVMRDP.TK.SR.FGFVTYA.TVEE.D | |
Retrocopy | LSNSESLKEPEQLQKLFIRRLSFETTNENRRSHFEQWGTLTDCVVMRDPKTKYSRNFGFVTYA<TVEEED |
Parental | AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD |
AAMN.RPHK..GRVVEPKRAVSRE.SQRPGAHLTVKKIFVGGIK.DTEEHHL.DYFEQ.GKIE.IEIMTD | |
Retrocopy | AAMNGRPHKMNGRVVEPKRAVSRENSQRPGAHLTVKKIFVGGIKDDTEEHHLQDYFEQSGKIEIIEIMTD |
Parental | RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS |
..SGKKRGF.FVTFDDHDSVDKIV.QKYHTV..HNCEVR.ALSKQE.ASASSS | |
Retrocopy | *ASGKKRGFVFVTFDDHDSVDKIVRQKYHTVHSHNCEVR*ALSKQETASASSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 177 .55 RPM |
SRP012922_cerebellum | 0 .00 RPM | 128 .12 RPM |
SRP012922_heart | 0 .00 RPM | 62 .65 RPM |
SRP012922_kidney | 0 .00 RPM | 56 .95 RPM |
SRP012922_liver | 0 .00 RPM | 49 .54 RPM |
SRP012922_lung | 0 .00 RPM | 170 .14 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 55 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 188 .75 RPM |