RetrogeneDB ID: | retro_mluc_2024 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429991:1823075..1824077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000030297 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPAB | ||
Ensembl ID: | ENSMLUG00000003380 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGSAAPPAGNQNGAEGDKINASKEEEDAG |
MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGS.APPA.NQN..EGD.INASKEEEDAG | |
Retrocopy | MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGSVAPPARNQNCTEGDQINASKEEEDAG |
Parental | KMFVGHLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHKLDGRVI |
KMFVGHLSWDTS.KDLKDYFTKFGEVVDCTIKMDPNTGRS.GFGFILFKDAASVEKVLDQKEH.LDGRVI | |
Retrocopy | KMFVGHLSWDTSRKDLKDYFTKFGEVVDCTIKMDPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVI |
Parental | DPKKAMAMKKEPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIDLPMDPKSNKRRGFVFITFKEEEEPVK |
DPKKAMAMKKEPVKKIFVGGLNPEATEEKIRE.FGEFGEIE.IDLPMDPKSNKRRGFVFITFK.EEEPVK | |
Retrocopy | DPKKAMAMKKEPVKKIFVGGLNPEATEEKIREHFGEFGEIETIDLPMDPKSNKRRGFVFITFK-EEEPVK |
Parental | KVLEKKFHTISGSKCEIKVALPRKVYQQQQYGSGGRGNRNRGNRGSGGGGGSGGGQSQSWNQGYGNYWNQ |
KVLEKKFHTISGSKCEIKVALPRKVYQQQQ.GSGG.GNRNR.NRG.GGGGGSGGG.SQS.NQGYGNYWNQ | |
Retrocopy | KVLEKKFHTISGSKCEIKVALPRKVYQQQQNGSGGCGNRNRRNRGRGGGGGSGGGRSQSFNQGYGNYWNQ |
Parental | GYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS-QRRGGHQNNYKPY |
GYGYQQGYGPGY.GYDYSP.GYYGYGPG.DYSQGSTNY..S..RRGGHQNNYKPY | |
Retrocopy | GYGYQQGYGPGYDGYDYSPHGYYGYGPGCDYSQGSTNYRRSHRRRGGHQNNYKPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000241 | 2 retrocopies | |
Homo sapiens | ENSG00000197451 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001189 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007909 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000648 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000003380 | 2 retrocopies |
retro_mluc_2024 , retro_mluc_2138,
|
Myotis lucifugus | ENSMLUG00000007578 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014452 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015775 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026424 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000030251 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016107 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017601 | 1 retrocopy |