RetrogeneDB ID: retro_mluc_599

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:13931869..13932852(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IGF2BP2
• Ensembl ID: ENSMLUG00000002631
• Aliases: None
• Description: None

Sequence

>retro_mluc_599
ACTGAAGAGATTCCTTTGAAAATCTTGGCCCACAATCGCTTGGTTGGAAGACTTATCGGAAAAGAAGGCAGAAATTTGAA
GAAAATTGAACATGAAACTGGGACCAAGATAACAATTTCATCCTTGCAGGATTTGAGCATATACAATCCTGAAAGAACCA
TCACTGTGAAGGGCACAGTTGAGGCCTGTGCCAGTACTGAGATGGAGATTATGAAGAAGCTACGTGAGGCCTTTGAAAAT
GACATGCTGGCTGTAAATCAACAAGCCAACCTGATCCCGGGGTTGAACCTCAGCGCACTTGTCATCTTTTCAACAGGATT
ATCTGTGCTGCCTCCACCCGCAGGGCCCCGAGGACCTCCCCCTGCTCCCCCCTACCACCTGTTCGCTGCCCTGTCCGGAT
ACTTCTCCCTCTGTACCCCCCTCACCAGTTCAGACCGTTCCCGCTGCATCACTCCTACCCGGAGCAGGATAACATGAATC
TATTCGTCCCGACCCATGTCGTGGGGGCCATCATGGGGAAGAAGGGCGCGCACATCAAGGATCTGGCTCGGTTTGGGGAC
TCCTCCTTCAAGATTGCACCACCGCAAGGCCCAGACGTCTGTGAAAGGATGGTCATCACCGCCGGACCGCTCTAATCCGA
CTTGAAGGCTCAGGGGCGGATCTTTGTCAAACTGAAAGAAGAGAACTTCGACCCCCTCAGGAGGTGAAGTAGGAAGCCCG
CCTCAGAGTGCCCTCTTCCACTGGTGGCCGGGTGATAGGGAAGGGCGGTAAATACGTGAATGAACTGCAGAATCTAACCA
GTGCAGAAATCGTCGTGCCTCATGACCAATCGCCCGATGAAAAAGACGAGGAAGTGATCGTCAGAATTATTGGGCATTTC
TTTGCGAGCCAGACCGCACAGCGCAAGATCAGGGAAATCGTACAACAGGTGAAGCAGCAGGAGCAGAAATACCCTCAGGG
AGTCCGCCTCACAGCGCAGCAAG

Alignment

ORF - retro_mluc_599 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.08 %
• Parental protein coverage: 61.84 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  TEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEMEI
          TEEIPLKILAHN.LVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACAS.EMEI
Retrocopy TEEIPLKILAHNRLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASTEMEI

Parental  MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPHAGPRGPPPPPPPYHPFASHSGYFS-SL
          MKKLREAFENDMLAVNQQANLIPGLNLSAL.IFSTGLSVLPP.AGPRG.PPP.PPYH.FA..SGYFS..L
Retrocopy MKKLREAFENDMLAVNQQANLIPGLNLSALVIFSTGLSVLPPPAGPRG-PPPAPPYHLFAALSGYFS<PL

Parental  YPPHQFSPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIIT
          YPPHQF.PFP.HHSYPEQ...NLF.PT..VGAI.GKKGAHIK.LARF...S.KIAP..GPDV.ERMVI..
Retrocopy YPPHQFRPFPLHHSYPEQDNMNLFVPTHVVGAIMGKKGAHIKDLARFGDSSFKIAPPQGPDVCERMVITA

Parental  GPPEAQFKAQGRIFGKLKEENF-FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRD
          GP.....KAQGRIF.KLKEENF...P.E.VK.EA..RVPSST.GRVIGKGGK.VNELQNLTSAE..VP.D
Retrocopy GPL*SDLKAQGRIFVKLKEENF<RPPQE-VK*EARLRVPSSTGGRVIGKGGKYVNELQNLTSAEIVVPHD

Parental  QTPDE-NEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQKYPQGV-ASQRSK
          Q.PDE..EEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQKYPQGV.ASQRSK
Retrocopy QSPDEKDEEVIVRIIGHFFASQTAQRKIREIVQQVKQQEQKYPQGV>ASQRSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_599 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000073792	2 retrocopies	retro_hsap_216, retro_hsap_4096,
Gorilla gorilla	ENSGGOG00000015035	2 retrocopies	retro_ggor_2679, retro_ggor_2748,
Myotis lucifugus	ENSMLUG00000002631	1 retrocopy	retro_mluc_599 ,
Myotis lucifugus	ENSMLUG00000016891	1 retrocopy	retro_mluc_1355,
Macaca mulatta	ENSMMUG00000023416	3 retrocopies	retro_mmul_2361, retro_mmul_409, retro_mmul_530,
Pongo abelii	ENSPPYG00000014373	3 retrocopies	retro_pabe_1723, retro_pabe_281, retro_pabe_837,