>retro_mmul_530
CAACAAGAGAAGAAAATAGACATGGAGAAGCTAAGTGGGCATCAGTTTGAGAACTACTTCTTCAAGATTTCCTACATCCC
AGACGAAGAGGTGAGCTCCCCTTCGTCCCCTCAGTGAGCCCAGTGTGGGGACCTCTCTTCCCGGGGAGCAAGGCCAGCCC
CTGGGGGCACTTCTCAGGCTAGACAGATTGATTTCCTGTTGAGGATCCTGGTCCCCACCCAGTTTGTTGGTGCCATCATC
AGGAAGGAGGGCTTGACCATAAAGGACATCACTAAGCAGACCCAGTCCCAGGTAGACATCCATAGAAAAGAGAACTCTGG
AGCTGCAGAGAAGCCTGTCACCATCCATGTCACCCCCGGGGGGACTTCTGAAGCATGCCGCATGATCCCGAAATCATGCA
GAAAGAGGCAGATGAGACCAAACTAGCCGAAGAGATTCCTCTGAAAATCTTTGCCCACAATGGCTTGGTTGGAAGACTGA
CTGGAAAAGAAGGCAGGAATTTGAAGAAAATTGAACATGAAACAGGGATCAAGATAGCAATCTCATCTTTGTAGGATTTG
AGCATATACAACCCGGAAAGAACCATCACTGTGAAGGGCACAATTGAGGCCTGTGCCAGTGCTGAGATAGAGATTATGAA
GAAGCTGCATGAGGCCTTTGAAAATGATATGTTGGCTGTTAATACCCACTCTGGATACTTCTCCAGCCTGTATCCCTATC
ACCAGTTTGGCCCGTTCTCGCATCATCACTGTTATCCAGAGGAGGAGATTGTGAATCTCTTCATCCCAACCCAGGCTGTG
GGCGCCATCATCGGGAAGAAGGGGGCACATATCAAACAGCTGGCGAGATTCGCCCCTGCA
ORF - retro_mmul_530 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.19 % |
Parental protein coverage: |
51.62 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | REEAKIAMEKLSGHQFENYSFKISYIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFPLRIL |
| ..E.KI.MEKLSGHQFENY.FKISYIPDEEVSSPS.PQ.AQ.GD.SSR....APGGTSQARQIDF.LRIL |
Retrocopy | QQEKKIDMEKLSGHQFENYFFKISYIPDEEVSSPSSPQ*AQCGDLSSRGARPAPGGTSQARQIDFLLRIL |
|
Parental | VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMIL-EIMQKEADE |
| VPTQFVGAII.KEGLTIK.ITKQTQS.VDIHRKENSGAAEKPVTIH.TP.GTSEACRMI..EIMQKEADE |
Retrocopy | VPTQFVGAIIRKEGLTIKDITKQTQSQVDIHRKENSGAAEKPVTIHVTPGGTSEACRMIP<EIMQKEADE |
|
Parental | TKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAE |
| TKLAEEIPLKI.AHNGLVGRL.GKEGRNLKKIEHETG.KI.ISSL.DLSIYNPERTITVKGT.EACASAE |
Retrocopy | TKLAEEIPLKIFAHNGLVGRLTGKEGRNLKKIEHETGIKIAISSL*DLSIYNPERTITVKGTIEACASAE |
|
Parental | IEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIK |
| IEIMKKL.EAFENDMLAVNTHSGYFSSLYP.HQFGPF.HHH.YPE.E.VNLFIPTQAVGAIIGKKGAHIK |
Retrocopy | IEIMKKLHEAFENDMLAVNTHSGYFSSLYPYHQFGPFSHHHCYPEEEIVNLFIPTQAVGAIIGKKGAHIK |
|
Parental | QLARFAGA |
| QLARFA.A |
Retrocopy | QLARFAPA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
0 .34 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
0 .32 RPM |
SRP007412_cerebellum |
0 .26 RPM |
4 .97 RPM |
SRP007412_heart |
0 .06 RPM |
5 .18 RPM |
SRP007412_kidney |
0 .00 RPM |
6 .81 RPM |
SRP007412_liver |
0 .00 RPM |
0 .28 RPM |
SRP007412_testis |
0 .08 RPM |
2 .22 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_530 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_530 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_530 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
11 retrocopies.