RetrogeneDB ID:

retro_ggor_2679

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:8:98356211..98357035(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:IGF2BP2
Ensembl ID:ENSGGOG00000015035
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2679
AGGAACAGGAAAATTCAGATTTGAAACATACCTCCTCACCTGCAGTGGGCGATGCTGGATGCACCTTTGGCTCAACACGG
GATAGTGGAGAATGTGGAACAAGTCAACACAGACACAGAAACTGCTGTTGTCAATGTCACATATGCAACAAGGGAAGAAG
CAAAATAGCCATGGAGGAGCTAAGCGGGCATCAGTTTGAGAACTATTCCTTCAAGATTTCCTAAATCCTGGATGAAGAGG
TGAGCTCCCCTTTACCCCCTCAGCGAGCCCAGGGTGGGGACCACTCTTCCGGGAGCAAGGTCACGCCCTGGGGGCTCTTC
TCAGGCCGGACAGACTGATTTCCCGCTGCGGATCCAACCCAGTTTGTTGGTGCCATGATCTGAAAGGAGGGCTTGACCAT
AGTGAACATCACTGAGCAGACCCAGTCCCGGGTAGACATCCATAGAAAAGAGAACTCTGGAGCTGCAGAGAAGCTTGTCA
CCATCCATGCCACCCCAGAGGGGACTTCTGAAGCATGCCACACGATTCTTGAAAGCATGCAGAAAGAGGCAGATGAGACC
AAACTAGCCGAAGAGATTCCTCTGAAAATCGTGGCCCACAATGGCTTGGTTGGAAGACTGATTGGAAAAGAAGGCAGAAA
TGTGAAGAAAAATGAACATGAAACAGGGACCAAGATAACAATCTCATCCTTGCAGGATTTGAGCATATGCAACCCGGAAA
GAACCATAACTGTGAAGGGCACAGTGGGGGCCTATGCCAGTGCTGAGATGGAGATTATGAAGAAGCTGCGTGAGGCCTTT
GAAAATGATATGCTGGCTGTTAAT

ORF - retro_ggor_2679 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.8 %
Parental protein coverage: 53.46 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRSRKIQIRNIPPHLQWEVLDGLLAQYGTVENVEQVNTDTETAVVNVTYATREEAK-IAMEKLSGHQFENY
R.RKIQI.NIPPHLQW..LD..LAQ.G.VENVEQVNTDTETAVVNVTYATREEAK.IAME.LSGHQFENY
RetrocopyRNRKIQI*NIPPHLQWAMLDAPLAQHGIVENVEQVNTDTETAVVNVTYATREEAK<IAMEELSGHQFENY
ParentalSFKISYIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKN
SFKIS.I.DEEVSSP.PPQRAQ.GDHSS......P.G....R...FP.....PTQFVGA.I.KEGLTI.N
RetrocopySFKIS*ILDEEVSSPLPPQRAQGGDHSSGSKV-TPWGLFSGRTD*FPAAD--PTQFVGAMI*KEGLTIVN
ParentalITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEIPLKILAHNGLVGR
IT.QTQSRVDIHRKENSGAAEK.VTIHATPEGTSEAC..ILE.MQKEADETKLAEEIPLKI.AHNGLVGR
RetrocopyITEQTQSRVDIHRKENSGAAEKLVTIHATPEGTSEACHTILESMQKEADETKLAEEIPLKIVAHNGLVGR
ParentalLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVN
LIGKEGRN.KK.EHETGTKITISSLQDLSI.NPERTITVKGTV.A.ASAE.EIMKKLREAFENDMLAVN
RetrocopyLIGKEGRNVKKNEHETGTKITISSLQDLSICNPERTITVKGTVGAYASAEMEIMKKLREAFENDMLAVN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .43 RPM
SRP007412_cerebellum 0 .00 RPM 6 .26 RPM
SRP007412_heart 0 .00 RPM 2 .10 RPM
SRP007412_kidney 0 .00 RPM 6 .66 RPM
SRP007412_liver 0 .00 RPM 0 .55 RPM
SRP007412_testis 0 .00 RPM 9 .32 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2679 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2679 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000000737922 retrocopies
Gorilla gorilla ENSGGOG000000088721 retrocopy
Gorilla gorilla ENSGGOG000000102861 retrocopy
Gorilla gorilla ENSGGOG00000015035 2 retrocopies
retro_ggor_2679 , retro_ggor_2748,
Myotis lucifugus ENSMLUG000000026311 retrocopy
Macaca mulatta ENSMMUG000000234163 retrocopies
Pongo abelii ENSPPYG000000143733 retrocopies



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