>retro_mmul_409
ATGATGAACAAGCTTTACATCGGGAACCTGAGCCCAGCCGTCACCGCCGACGACCTCCGGCAGCTCTTTGGGGACAGCAA
GCTGCCCCTGGCGGGACAGGTCCTGCTCAAGTCCGGCCACGCCTGTGTGGACTACCCCGACCAGAACTGGGCCATCTGTG
CCATCGAGACCGTCTCGGGTAAAGTGGAATTGCATGGGAAAATCGTGGAAGTTGATTCAGTCTCTAAAAAGCTAAGGAGC
AGGAAAATTCAGATTTGAAACATCCCTCCTCGCCTGCAGTGGGAGGTGTTGGATGGACTTTTGGCTCAATATGGAACAGT
GGAGAGTGTGGAACAAGTCAACACAGACACAGAAACCGCTATTGTCAACGTCACATATGCAACAAGAGAAGAAGCAAAAA
TAGTGATGGAGAAGCTAAGTGGGCATCAGTGTGAGAACTACTCCTTCAAGATTTCCCACATCCCGGATGAAGAGGTGAGC
TCCCCTTCACCCCCTCAGCGAGCCCAGTGTGGGGACCACTCTTCCCGGGGAGCAAGGCCAGCCCCTGGGGGCGCTTCTCA
GGCCAGACAGATTGATTTCCCACTGCGGATCCTGGTCCCCACCCAGTTTGTTGGTGCCATCATCGGAAAGGAGGGCTTGA
CCATAAAGAACATCACTAAGCAGACCCAGTCCCAGGTAGACATCCATAGAAAAGAGAACTCTGGAGCTGCAGAGAAGCCT
GTCACCATCCATGTCACCCCACGGGGGACTTCTGAAGCATGCCGCATGATTCCCGAAATCATGCAGAAAGAGGCAGATGA
GACCAAACTAGCCGAAGAGATTCCTCTGAAAATCTTGGCCCGTAATAGCTTGGTTGGAAGACTGACTGGAAAAGAAGGCA
GGAATTTGAAGAAAATTCAACATGAAACAGGGACCGAGATAGCAATCTCATCTTTGCAAGATTTGAGTATATACAATCCG
GAAAGAACCACCACTGTGAAGGGCACAGTTGAGGCCTGTGCCAGTGCTGAGATAGAGATTATGAAGAAGCTGCGTGAGGC
CTTTGAAAAGGATATGTTGGCTGTTAATACCCACTCCAGATACTTCTCCAGCCTGCACCCCCATCACCAGTTTGGCCCGT
TCTCGCATCATCACTGTTATCCAGAAGAGGAGACTGTGAATCTCTTCATCCTACCCAAGCTGTGGGCGCCATCATCGGGA
AGAAGGGGGCACACATCAAACAGCTGGTGAGATTCGCTGGAGCCTGCATCAAGATCGCCCCTGCAGAAGGCCCAGACGTC
AGCGAAAGGATGGTCATCATCACCCGGCCACCGGAAGCCCAGCTCTAGGCCCAGGGACAGATCTTTGGGAAACTGAAAGA
GGAAAACTACTTTAACCCCAAAGAAGAAGTGAAGCTGGAAGCCCATGTCAGAGTACCC
ORF - retro_mmul_409 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.11 % |
Parental protein coverage: |
85.25 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME |
| MMNKLYIGNLSPAVTADDLRQLFGD.KLPLAGQVLLKSG.A.VDYPDQNWAI.AIET.SGKVELHGKI.E |
Retrocopy | MMNKLYIGNLSPAVTADDLRQLFGDSKLPLAGQVLLKSGHACVDYPDQNWAICAIETVSGKVELHGKIVE |
|
Parental | VDYSVSKKLRSRKIQIRNIPPHLQWEVLDGLLAQYGTVENVEQVNTDTETAVVNVTYATREEAKIAMEKL |
| VD.SVSKKLRSRKIQI.NIPP.LQWEVLDGLLAQYGTVE.VEQVNTDTETA.VNVTYATREEAKI.MEKL |
Retrocopy | VD-SVSKKLRSRKIQI*NIPPRLQWEVLDGLLAQYGTVESVEQVNTDTETAIVNVTYATREEAKIVMEKL |
|
Parental | SGHQFENYSFKISYIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIG |
| SGHQ.ENYSFKIS.IPDEEVSSPSPPQRAQ.GDHSSR....APGG.SQARQIDFPLRILVPTQFVGAIIG |
Retrocopy | SGHQCENYSFKISHIPDEEVSSPSPPQRAQCGDHSSRGARPAPGGASQARQIDFPLRILVPTQFVGAIIG |
|
Parental | KEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEIPLKIL |
| KEGLTIKNITKQTQS.VDIHRKENSGAAEKPVTIH.TP.GTSEACRMI.EIMQKEADETKLAEEIPLKIL |
Retrocopy | KEGLTIKNITKQTQSQVDIHRKENSGAAEKPVTIHVTPRGTSEACRMIPEIMQKEADETKLAEEIPLKIL |
|
Parental | AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKLREAFE |
| A.N.LVGRL.GKEGRNLKKI.HETGT.I.ISSLQDLSIYNPERT.TVKGTVEACASAEIEIMKKLREAFE |
Retrocopy | ARNSLVGRLTGKEGRNLKKIQHETGTEIAISSLQDLSIYNPERTTTVKGTVEACASAEIEIMKKLREAFE |
|
Parental | NDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFI-PTQAVGAIIGKKGAHIKQLARFAGASIK |
| .DMLAVNTHS.YFSSL.PHHQFGPF.HHH.YPE.E.VNLFI.PTQAVGAIIGKKGAHIKQL.RFAGA.IK |
Retrocopy | KDMLAVNTHSRYFSSLHPHHQFGPFSHHHCYPEEETVNLFI<PTQAVGAIIGKKGAHIKQLVRFAGACIK |
|
Parental | IAPAEGPDVSERMVIITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVP |
| IAPAEGPDVSERMVIIT.PPEAQ..AQG.IFGKLKEEN.FNPKEEVKLEAH.RVP |
Retrocopy | IAPAEGPDVSERMVIITRPPEAQL*AQGQIFGKLKEENYFNPKEEVKLEAHVRVP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .34 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
0 .32 RPM |
SRP007412_cerebellum |
0 .32 RPM |
4 .97 RPM |
SRP007412_heart |
0 .00 RPM |
5 .18 RPM |
SRP007412_kidney |
0 .00 RPM |
6 .81 RPM |
SRP007412_liver |
0 .04 RPM |
0 .28 RPM |
SRP007412_testis |
1 .43 RPM |
2 .22 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_409 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_409 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_409 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
11 retrocopies.