RetrogeneDB ID: | retro_mmul_178 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:90191546..90192695(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000011562 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4172 | ||
Ensembl ID: | ENSMMUG00000007497 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.58 % |
Parental protein coverage: | 55.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI |
Y..A.LYVGDL..DVTE.MLY.KF.PAGP....R.CRD..TR..LGY.YVNF..PADAE.AL.TMNFD.I | |
Retrocopy | YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI |
Parental | KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFET |
.GKP.R.MWSQ.D..LRKSGVGN.FIKNLDKSIDN.AL...FSAFGNILSCKVVCD.NGSKGYA.VHF.. | |
Retrocopy | NGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDS |
Parental | QEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK-EFTNVYIKNFGEEVDDESLKELFSQFGK |
..AA..AI..MNG..LN.R.V.VGRFK...ER.AE........FTNV..KN.G...DDE.LKELF...G. | |
Retrocopy | LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP |
Parental | TLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE |
T.SVKV.RD.SGKSKGFGFV.YE.HE.A.KAV....GK.I.GK...VGRAQKK.ER.AEL.R.FE.L... | |
Retrocopy | TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLK |
Parental | RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR |
..SR..GV..YIKNLD.TI.DEKL..EFS.FGSI..AKVM.E.G..KGFG.VCFSS.EEATKAV.EMNGR | |
Retrocopy | EKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGR |
Parental | IVGSKPLYVALAQRK |
.VGSKPL.V.L.Q.. | |
Retrocopy | VVGSKPLHVTLGQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .79 RPM | 26 .78 RPM |
SRP007412_brain_prefrontal_cortex | 1 .51 RPM | 34 .75 RPM |
SRP007412_cerebellum | 0 .45 RPM | 29 .51 RPM |
SRP007412_heart | 1 .77 RPM | 109 .94 RPM |
SRP007412_kidney | 0 .35 RPM | 33 .45 RPM |
SRP007412_liver | 0 .44 RPM | 38 .71 RPM |
SRP007412_testis | 0 .45 RPM | 80 .32 RPM |