Parental gene:

Pabpc4, ENSRNOG00000015642

Aliases:None
Description:polyadenylate-binding protein 4 [Source:RefSeq peptide;Acc:NP_001094008]
Organism:Rat (Rattus norvegicus)
Coordinates:5:144769097..144784395(+)


>ENSRNOG00000015642
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGATCTGCACTCCGATGTCACCGAAGCCATGCT
GTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCTCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTTGATGTGATTAAGGGGAAG
CCAATCCGGATCATGTGGTCTCAGAGGGACCCCTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTCATCAAGAACCTGGA
CAAGTCTATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTCGGAAACATCCTGTCCTGTAAGGTGGTCTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCAACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTGTTCGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGC
CAAGGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAGGGAGCTATTCAGCCAGT
TTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCCAAAGGCTTCGGCTTCGTGAGCTATGAGAAA
CATGAGGATGCCAATAAGGCTGTGGAAGAAATGAATGGAAAAGAAATGAGTGGGAAATCCATATTTGTAGGCCGTGCTCA
GAAAAAAGTAGAACGTCAGGCGGAGTTAAAACGGAAATTCGAACAGCTGAAGCAGGAGAGGATTAGTCGGTACCAGGGAG
TGAATCTCTACATTAAGAACTTGGATGACACCATTGACGATGAGAAGTTAAGGAAAGAGTTCTCACCCTTTGGATCAATC
ACCAGTGCGAAGGTGATGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTTTGTCTGTTTCTCCTCTCCTGAAGAGGCAAC
CAAAGCGGTCACGGAGATGAACGGACGCATTGTGGGCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAGGAGC
GGAAGGCTCACCTGACTAACCAGTATATGCAGCGTGTGGCAGGAATGAGAGCGCTCCCTGCCAACGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTACTTTGTGCCGGCAGTGCCACAGGCCCAGGGAAGACCTCCATATTACACACCTAATCA
ATTAGCGCAAATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCCCTGC
GGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCTGGCTCCAACTGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTT
GGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCTGGAGGCGTCCCTACGGCTGTGCCAAACCTTGC
ACCTCGTGCTACAGTCGCTGCTGCTGCTCCCAGGGCTGTGGCTCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACC
CTGCCATTCAGCCGCTGCAGGCCCCCCAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTGCCTCCATGCTGGCT
GCAGCTCCTCCCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCCACTTATCCAAACAATGCATTCAAACCTGGC
TGGAAAAATTACAGGGATGCTGCTAGAAATCGACAACTCTGAGCTGCTCCACATGCTGGAGTCCCCCGAGTCCCTCCGTT
CCAAGGTGGATGAAGCTGTGGCAGTCCTGCAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCT
GCTGCTACCTCTTAA

Library Parental gene expression (RPM)
SRP017611_liver 44 .98 RPM
SRP017611_kidney 70 .62 RPM
SRP017611_brain 34 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_many2many 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2many 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000003081 ortholog_one2many 2 retrogenes
retro_cfam_45, retro_cfam_837,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2many 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Callithrix jacchus ENSCJAG00000002512 ortholog_one2many 3 retrogenes
retro_cjac_214, retro_cjac_2722, retro_cjac_284,
Cavia porcellus ENSCPOG00000009552 ortholog_one2many 2 retrogenes
retro_cpor_1330, retro_cpor_77,
Equus caballus ENSECAG00000009396 ortholog_one2many 2 retrogenes
retro_ecab_2, retro_ecab_502,
Felis catus ENSFCAG00000015254 ortholog_many2many 2 retrogenes
retro_fcat_116, retro_fcat_545,
Homo sapiens ENSG00000090621 ortholog_one2many 2 retrogenes
retro_hsap_109, retro_hsap_74,
Gorilla gorilla ENSGGOG00000004002 ortholog_one2many 3 retrogenes
retro_ggor_2127, retro_ggor_87, retro_ggor_916,
Loxodonta africana ENSLAFG00000000151 ortholog_one2many 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 ortholog_many2many 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2many 2 retrogenes
retro_mluc_228, retro_mluc_397,
Macaca mulatta ENSMMUG00000007497 ortholog_one2many 1 retrogene
retro_mmul_178,
Monodelphis domestica ENSMODG00000017657 ortholog_many2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_many2many 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_many2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Nomascus leucogenys ENSNLEG00000011928 ortholog_one2many 2 retrogenes
retro_nleu_1517, retro_nleu_62,
Oryctolagus cuniculus ENSOCUG00000000562 ortholog_one2many 2 retrogenes
retro_ocun_153, retro_ocun_792,
Otolemur garnettii ENSOGAG00000004067 ortholog_one2many 1 retrogene
retro_ogar_71,
Ochotona princeps ENSOPRG00000011984 ortholog_one2many 1 retrogene
retro_opri_1133,
Pongo abelii ENSPPYG00000001506 ortholog_one2many 2 retrogenes
retro_pabe_190, retro_pabe_2563,
Pan troglodytes ENSPTRG00000000573 ortholog_one2many 3 retrogenes
retro_ptro_101, retro_ptro_2093, retro_ptro_8,
Rattus norvegicus ENSRNOG00000003076 other_paralog 1 retrogene
retro_rnor_1374,
Rattus norvegicus ENSRNOG00000008639 within_species_paralog 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2many 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000003660 ortholog_one2many 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2many 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_92 66.03 56.52
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2. retro_rnor_175 68.77 56.68
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Download FASTA sequences of all ENSRNOG00000015642 retrocopies