Parental gene:

ENSFCAG00000015254

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:C1:29726385..29741287(-)


>ENSFCAG00000015254
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTCTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTACGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCGGCTGACGCTGAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGTATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAATGTCTTCATCAAGAATCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTGTCTTGCAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCTGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTCAAGTCTCGAAAAGAGCGAGAAGCCGAGCTTGGAGCCAAAGC
CAAGGAGTTCACCAATGTTTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGCCTGAAAGAGCTGTTTAGTCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAA
CACGAGGATGCCAATAAGGCCGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTTGTAGGCCGCGCACA
GAAGAAAGTGGAACGGCAGGCCGAGTTAAAGCGGAAATTTGAACAGCTGAAGCAAGAGAGAATTAGTCGGTATCAGGGAG
TGAATCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAGTTAAGAAAAGAGTTTTCTCCTTTTGGATCAATC
ACCAGCGCTAAGGTAATGTTGGAGGATGGGAGAAGCAAAGGGTTTGGCTTTGTCTGCTTCTCATCTCCTGAAGAGGCGAC
CAAAGCGGTCACTGAGATGAATGGACGCATCGTGGGCTCCAAGCCGCTGTACGTCGCCCTGGCCCAGAGAAAGGAAGAGA
GAAAGGCTCACCTGACCAACCAGTATATGCAGCGGGTGGCTGGAATGAGAGCACTTCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGCTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCGTATTACACACCTAACCA
GTTAGCACAGATGAGGCCTAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACT
GCTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCTGTGCAGACCTTAGCACCTCGTGCTGCTGTTGCTGCTGCTGCTCCTC
GGGCTGTCGCACCTTATAAATACGCTTCCAGTGTCCGCAGCCCTCACCCTGCCATCCAGCCTCTGCAGGCACCCCAGCCT
GCGGTCCATGTGCAGGGGCAGGAGCCCTTGACCGCCTCCATGTTGGCTGCAGCACCCCCCCAGGAACAGAAGCAGATGTT
GGGAGAACGTTTGTTCCCACTCATCCAAACCATGCATTCAAACCTGGCTGGAAAAATCACAGGAATGCTGCTGGAGATTG
ACAACTCTGAGCTGCTGCACATGCTGGAGTCCCCTGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG

Library Parental gene expression (RPM)
SRP017611_liver 53 .88 RPM
SRP017611_kidney 52 .25 RPM
SRP017611_brain 35 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_one2one 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2one 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000003081 ortholog_one2one 2 retrogenes
retro_cfam_45, retro_cfam_837,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2one 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Callithrix jacchus ENSCJAG00000002512 possible_ortholog 3 retrogenes
retro_cjac_214, retro_cjac_2722, retro_cjac_284,
Cavia porcellus ENSCPOG00000009552 possible_ortholog 2 retrogenes
retro_cpor_1330, retro_cpor_77,
Equus caballus ENSECAG00000009396 ortholog_one2one 2 retrogenes
retro_ecab_2, retro_ecab_502,
Felis catus ENSFCAG00000001874 within_species_paralog 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000090621 possible_ortholog 2 retrogenes
retro_hsap_109, retro_hsap_74,
Gorilla gorilla ENSGGOG00000004002 possible_ortholog 3 retrogenes
retro_ggor_2127, retro_ggor_87, retro_ggor_916,
Loxodonta africana ENSLAFG00000000151 ortholog_one2one 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 possible_ortholog 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2one 2 retrogenes
retro_mluc_228, retro_mluc_397,
Macaca mulatta ENSMMUG00000007497 possible_ortholog 1 retrogene
retro_mmul_178,
Monodelphis domestica ENSMODG00000017657 ortholog_many2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_one2one 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_many2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Nomascus leucogenys ENSNLEG00000011928 possible_ortholog 2 retrogenes
retro_nleu_1517, retro_nleu_62,
Oryctolagus cuniculus ENSOCUG00000000562 possible_ortholog 2 retrogenes
retro_ocun_153, retro_ocun_792,
Otolemur garnettii ENSOGAG00000004067 possible_ortholog 1 retrogene
retro_ogar_71,
Ochotona princeps ENSOPRG00000011984 possible_ortholog 1 retrogene
retro_opri_1133,
Pongo abelii ENSPPYG00000001506 possible_ortholog 2 retrogenes
retro_pabe_190, retro_pabe_2563,
Pan troglodytes ENSPTRG00000000573 possible_ortholog 3 retrogenes
retro_ptro_101, retro_ptro_2093, retro_ptro_8,
Rattus norvegicus ENSRNOG00000015642 ortholog_many2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2many 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000003660 ortholog_one2one 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2one 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_116 67.40 55.15
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2. retro_fcat_545 74.27 57.12
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Download FASTA sequences of all ENSFCAG00000015254 retrocopies