RetrogeneDB ID: | retro_rnor_92 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:92037489..92038638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000003354 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pabpc4 | ||
Ensembl ID: | ENSRNOG00000015642 | ||
Aliases: | None | ||
Description: | polyadenylate-binding protein 4 [Source:RefSeq peptide;Acc:NP_001094008] |
Percent Identity: | 66.03 % |
Parental protein coverage: | 56.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI |
Y..A.LYVGDL..DVTE.MLY.KF.PAGP....R.CRD..TR..LGY.YVNF..PADAE.AL.TMNFD.I | |
Retrocopy | YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI |
Parental | KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFET |
.GKP.R.MWSQ.D..LRKSGVGN.FIKNLDKSIDN.AL...FSAFGNILSCKVVCD.NGSKGYA.VHF.. | |
Retrocopy | NGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDS |
Parental | QEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK-EFTNVYIKNFGEEVDDENLRELFSQFGK |
..AAN.AI..MNG..LN.R.V.VGRFK...ER.AE........FTNV..KNFG...DDE.L..LFS..G. | |
Retrocopy | LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGP |
Parental | TLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQE |
T.SVKV.RD..GKSKGFGFV.YE.HE.A.KAV.E..GK...GK...VGRAQKK.ER.AEL.R.FE.LK.. | |
Retrocopy | TESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLK |
Parental | RISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR |
...R..GV..YIKNLD.TI.DEKL..EFS.FGSI..AKVM.E.G..KGFG.VCFSS.EEA.KAV.EMNGR | |
Retrocopy | DKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNGR |
Parental | IVGSKPLYVALAQRK |
.VGSK.L.V.L.Q.. | |
Retrocopy | VVGSKTLHVTLGQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .50 RPM | 34 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 70 .62 RPM |
SRP017611_liver | 0 .07 RPM | 44 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_2 |