RetrogeneDB ID: | retro_fcat_545 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:92159141..92160269(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028270 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015254 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.27 % |
Parental protein coverage: | 57.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD |
MN.AA..Y..ASLYVGDLH.DVTE..L..KFS..GPVLSIR.CRD..TRRSLGYAYVNF...ADA.RALD | |
Retrocopy | MNVAAK-YRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD |
Parental | TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY |
TMNFD.IKGKPIR.MWSQRD..LRKSG.GNVFIKNLD.SIDNK.LY..FSAFG.ILS.KV..D..GS.GY | |
Retrocopy | TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGY |
Parental | AFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL |
AFVHF..Q.AAD.AIE.MNG.LL.D...FVGRFK.RK.REAEL..KA.EFTNVYIKNFG...DDE.LKE. | |
Retrocopy | AFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEV |
Parental | FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF |
FS..GKTLSVKVM.D.SGKSKGFGFVS...HE.A.KAVEEMNGK.I.G...FVGRAQKK.ERQAELK..F | |
Retrocopy | FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVF |
Parental | EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV |
EQLKQER..R.QG..LYIKNLDDTIDDEKL..EFS.FGSI...K.M.E.GRSKGFG..CFSSPEEATKA. | |
Retrocopy | EQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAM |
Parental | TEMNGRIVGSKPLYVALAQRKEERKAH |
.EMNGRI.GSKPLY.ALAQ...ER.A. | |
Retrocopy | AEMNGRILGSKPLYIALAQKP*ERNAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 35 .46 RPM |
SRP017611_kidney | 0 .72 RPM | 52 .25 RPM |
SRP017611_liver | 0 .10 RPM | 53 .88 RPM |